Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Shotgun metagenome sequencing of human fecal

PROVIDER: PRJNA1222598 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR32335112_1.fastq.gz	Fastqsanger.gz
	SRR32335112_2.fastq.gz	Fastqsanger.gz
	SRR32335113_1.fastq.gz	Fastqsanger.gz
	SRR32335113_2.fastq.gz	Fastqsanger.gz
	SRR32335114_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 12

Similar Datasets

Gut metagenome/FINRISK 2002 (Salosensaari et al. Nature Comms 2021)

Project description:The main goal of the project is the study the associations between the gut metagenome and human health. The dataset contains data for n=7211 FINRISK 2002 participants who underwent fecal sampling. Demultiplexed shallow shotgun metagenomic sequences were quality filtered and adapter trimmed using Atropos (Didion et al., 2017), and human filtered using Bowtie2 (Langmead and Salzberg, 2012).

| EGAS00001005020 | EGA

Gut metagenome/FR 2002 (Salosensaari et al. Nature Comms 2021)

| EGAS00001005038 | EGA

Reconstruction of the personal information from human genome reads in gut metagenome sequencing data

Project description:Human DNA present in fecal samples can result in a small number of human reads in gut shotgun metagenomic sequencing data. However, it is currently unclear how much personal information can be reconstructed from such reads and this has not been quantitatively evaluated. Such a quantitative evaluation is necessary to clarify the ethical concerns related to data sharing and to enable the efficient use of human genetic information in stool samples, such as for research and forensics. Here, we used genomic approaches to reconstruct personal information from fecal metagenomes of 343 Japanese individuals with associated human genotype data. Our approach can be used to quantify the personal information contained within gut metagenome data.

| EGAS00001007027 | EGA

PRIMAL

Project description:PRIMAL fecal samples shotgun metagenome sequencing

| PRJEB79896 | ENA

Project description:Mouse fecal bacteria metagenome shotgun sequencing

| PRJNA907967 | ENA

Defining the Secrebiome: the expressed secretome of the gut microbiome and its role in obese Mexican children

Project description:high throughput sequencing of the metagenome of mexican children

2020-03-16 | GSE143207 | GEO

83707d0b-6403-403c-9e86-b1c9ff233eb5 - samples

Project description:Shotgun metagenomic sequencing data of a total 2,338 fecal DNA samples from adults of the Pinggu cohort.

| EGAD00001007064 | EGA

T. brucei genomes

Project description:Shotgun sequencing of various T. brucei isolates

2016-01-04 | E-MTAB-3800 | biostudies-arrayexpress

Project description:Human fecal metagenome sequencing

| PRJNA770492 | ENA

Draft genome sequencing of Lactuca. sativa cv. Tizian

Project description:The draft genome of L. sativa (lettuce) cv. Tizian was sequenced in two Illumina sequencing runs, mate pair and shotgun. This entry contains the RAW sequencing data.

2018-02-09 | E-MTAB-6347 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data