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ABSTRACT: Diabrotica undecimpunctata host plant response RNA-Seq study

PROVIDER: PRJNA1225181 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR32381144.fastq.gz	Fastqsanger.gz
	SRR32381145.fastq.gz	Fastqsanger.gz
	SRR32381146.fastq.gz	Fastqsanger.gz
	SRR32381147.fastq.gz	Fastqsanger.gz
	SRR32381148.fastq.gz	Fastqsanger.gz

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Orientia tsutsugamushi proteome profile host context

Project description:Emerging and neglected pathogens pose challenges as their biology is frequently poorly understood, and genetic tools often do not exist to manipulate them. Organism agnostic sequencing technologies offer a promising approach to understand the molecular processes underlying these diseases. Here we apply dual RNA-seq to Orientia tsutsugamushi (Ot), the obligate intracellular causative agent of the vector-borne human disease scrub typhus. Half the Ot genome is composed of repetitive DNA, and there is minimal collinearity in gene order between strains. Integrating RNA-seq, comparative genomics, proteomics, and machine learning, we investigated the transcriptional architecture of Ot, including operon structure and non-coding RNAs, and found evidence for wide-spread post-transcriptional antisense regulation. We compared the host response to two clinical isolates and identified distinct immune response networks that are up-regulated in response to each strain, leading to predictions of relative virulence which were confirmed in a mouse infection model. Thus, dual RNA-seq can reveal the biology and host-pathogen interactions of a poorly characterized and genetically intractable organism such as Ot.

2020-06-05 | PXD017956 | JPOST Repository

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