Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Candidatus Solibacter usitatus Ellin6076

ABSTRACT: A soil bacterium isolated from pastureland in Victoria, Australia.

PROVIDER: PRJNA12638 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Candidatus Solibacter usitatus

Project description:Common soil bacterium

| PRJNA35373 | ENA

Transcription profiling of freshwater tolerant and strictly marine strains of E. siliculosus under different salinites

Project description:Comparison of freshwater tolerant (accession CCAP 1310/196, origin Hopkins River Falls, Victoria, Australia) and strictly marine strain (accession CCAP 1310/4, origin San Juan de Marcona, Peru) of E. siliculosus under different salinites

2009-12-19 | E-TABM-731 | biostudies-arrayexpress

Protistan predation selects for antibiotic resistance in soil bacterial communities (Victoria, Australia)

Project description:Soil microorganisms in Victoria, Australia Raw sequence reads

| PRJNA1019872 | ENA

Proteomics of Nitrospirae - Rice paddy Nitrospirae encode and express genes related to sulfate respiration: proposal of the new genus Candidatus Sulfobium

Project description:We present the draft genome of Nitrospirae bacterium Nbg-4 as a representative of this clade and couple this to in situ protein expression under sulfate-enriched and sulfate-depleted conditions in rice paddy soil. The proteins were extracted from the soil and analysed via LC-MS/MS measurements.

2018-01-08 | PXD007817 | Pride

Biological consequences of ancient gene acquisition and duplication in the large genome of Candidatus Solibacter usitatus Ellin6076.

Project description:Members of the bacterial phylum Acidobacteria are widespread in soils and sediments worldwide, and are abundant in many soils. Acidobacteria are challenging to culture in vitro, and many basic features of their biology and functional roles in the soil have not been determined. Candidatus Solibacter usitatus strain Ellin6076 has a 9.9 Mb genome that is approximately 2-5 times as large as the other sequenced Acidobacteria genomes. Bacterial genome sizes typically range from 0.5 to 10 Mb and are influenced by gene duplication, horizontal gene transfer, gene loss and other evolutionary processes. Our comparative genome analyses indicate that the Ellin6076 large genome has arisen by horizontal gene transfer via ancient bacteriophage and/or plasmid-mediated transduction, and widespread small-scale gene duplications, resulting in an increased number of paralogs. Low amino acid sequence identities among functional group members, and lack of conserved gene order and orientation in regions containing similar groups of paralogs, suggest that most of the paralogs are not the result of recent duplication events. The genome sizes of additional cultured Acidobacteria strains were estimated using pulsed-field gel electrophoresis to determine the prevalence of the large genome trait within the phylum. Members of subdivision 3 had larger genomes than those of subdivision 1, but none were as large as the Ellin6076 genome. The large genome of Ellin6076 may not be typical of the phylum, and encodes traits that could provide a selective metabolic, defensive and regulatory advantage in the soil environment.

| S-EPMC3174227 | biostudies-literature

Project description:Archival Treponema pallidum from Victoria, Australia

| PRJNA701499 | ENA

Treponema

Project description:Bovine digital dermatitis in Victoria, Australia

| PRJNA429866 | ENA

KPC-producing Enterobacteriaceae

Project description:KPC-producing Enterobacteriaceae in Victoria, Australia

| PRJNA397262 | ENA

Carbapenemase-producing Enterobacterales from MDU Public Health Laboratory

Project description:Carbapenemase-producing Enterobacterales from human samples, Victoria, Australia

| PRJNA529744 | ENA