Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Burkholderia ambifaria AMMD

ABSTRACT: Strain used for biocontrol of pea plant phytopathogens.

PROVIDER: PRJNA13490 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR3923531.fastq.gz	Fastqsanger.gz
	SRR3923532.fastq.gz	Fastqsanger.gz
	GCA_000203915.1_sequence_report.txt	Txt

Items per page:

1 - 3 of 3

Similar Datasets

Burkholderia ambifaria MEX-5

Project description:Strain with potential as a biocontrol agent

| PRJNA20667 | ENA

Identification of quorum sensing-controlled genes in Burkholderia ambifaria.

Project description:The Burkholderia cepacia complex (Bcc) comprises strains with a virulence potential toward immunocompromised patients as well as plant growth-promoting rhizobacteria (PGPR). Owing to the link between quorum sensing (QS) and virulence, most studies among Bcc species have been directed toward QS of pathogenic bacteria. We have investigated the QS of B. ambifaria, a PGPR only infrequently recovered from patients. The cepI gene, responsible for the synthesis of the main signaling molecule N-octanoylhomoserine lactone (C8 -HSL), was inactivated. Phenotypes of the B. ambifaria cepI mutant we observed, such as increased production of siderophores and decreased proteolytic and antifungal activities, are in agreement with those of other Bcc cepI mutants. The cepI mutant was then used as background strain for a whole-genome transposon-insertion mutagenesis strategy, allowing the identification of 20 QS-controlled genes, corresponding to 17 loci. The main functions identified are linked to antifungal and antimicrobial properties, as we have identified QS-controlled genes implicated in the production of pyrrolnitrin, burkholdines (occidiofungin-like molecules), and enacyloxins. This study provides insights in the QS-regulated functions of a PGPR, which could lead to beneficial potential biotechnological applications.

| S-EPMC3633348 | biostudies-literature

Project description:Streptomyces as biocontrol agents of phytopathogens

| PRJNA1153525 | ENA

Burkholderia ambifaria

Project description:Pathogenic in cystic fibrosis patients

| PRJNA20679 | ENA

Trichoderma applications on strawberry plants: a proteomic analysis of treated vs control plants

Project description:Many Trichoderma spp. are successful plant beneficial microbial inoculants due to their ability to act as biocontrol agents with direct antagonistic activities to phytopathogens, and as biostimulants capable of promoting plant growth. This work investigates the effects of treatments with three selected Trichoderma (strains T22, TH1 and GV41) to strawberry plants on the productivity and proteome of the formed fruit. Proteomic analysis of fruits,harvested from the plants previously treated with Trichoderma and control plants was performed by using a TMT-based protein quantification strategy. Bioinformatic analysis of the differential proteins accumulation in fruits, harvested from the treated plants, revealed a central network of interacting molecular species, that demonstrated the modulation of different plant physiological processes following the microbial inoculation.

2020-06-09 | PXD016951 | Pride

Burkholderia ambifaria strain:CF3

Project description:Burkholderia ambifaria strain:CF3 Genome sequencing

| PRJNA1101848 | ENA

Burkholderia ambifaria strain:BJQ0010

Project description:Burkholderia ambifaria strain:BJQ0010 Genome sequencing and assembly

| PRJNA685333 | ENA

Burkholderia ambifaria strain:T16

Project description:Burkholderia ambifaria strain:T16 Genome sequencing and assembly

| PRJNA507263 | ENA

Burkholderia ambifaria strain:RZ2MS16

Project description:Burkholderia ambifaria strain:RZ2MS16 Genome sequencing and assembly

| PRJNA296767 | ENA

Expression data from citrus fruit (Citrus sinensis L. Osbeck)

Project description:An antifungal aroma substance, 2-phenylethanol (PEA), was isolated from antagonistic yeast strain Kloeckera apiculata extract. Microarry were used to analyse its role citrus. We used microarrays to detail the global programme of gene expression underlying Citrus were treated with 1.0x108 cells/ml K. apiculata (KA), PEA (0.15%), the extract (1000xdilute) and control (CK) for 24 h,

2014-01-01 | GSE45680 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data