Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Deschampsia antarctica

ABSTRACT: Deschampsia antarctica Transcriptome or Gene expression

PROVIDER: PRJNA160247 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR489435.fastq.gz	Fastqsanger.gz
	SRR489436.fastq.gz	Fastqsanger.gz
	SRR489437.fastq.gz	Fastqsanger.gz
	SRR489438.fastq.gz	Fastqsanger.gz

Items per page:

1 - 4 of 4

Similar Datasets

Deschampsia antarctica

Project description:Deschampsia antarctica Transcriptome or Gene expression

| PRJNA237269 | ENA

Deschampsia antarctica

Project description:Deschampsia antarctica overview

| PRJNA160353 | ENA

Deschampsia antarctica

Project description:Deschampsia antarctica Genome sequencing

| PRJNA237267 | ENA

Deschampsia antarctica

Project description:Deschampsia antarctica Raw sequence reads

| PRJNA941125 | ENA

Deschampsia antarctica rhizosphere

Project description:Deschampsia antarctica rhizosphere communities and isolates

| PRJNA861326 | ENA

Deschampsia antarctica strain:cultivar

Project description:small RNAs-seq for Deschampsia antarctica

| PRJNA237351 | ENA

Expression analysis of Pseudozyma antarctica T-34 and Ustilago maydis on different carbon source

Project description:Investigation of whole genome gene expression level in Pseudozyma antarctica T-34, compared to Ustilago maydis UM521. To clarify the transcriptomic characteristics of Pseudozyma antarctica under the conditions of high MEL production, a DNA microarray of both the strains, Pseudozyma antarctica T-34 and Ustilago maydis UM521 was prepared and analyzed the transcriptomes.

2014-03-21 | GSE47171 | GEO

Plant and bird presence strongly influences the microbial communities in soils of Admiralty Bay, Maritime Antarctica

Project description:Understanding the environmental factors that shape microbial communities is crucial, especially in extreme environments, like Antarctica. Two main forces were reported to influence Antarctic soil microbes: birds and plants. Both birds and plants are currently undergoing unprecedented changes in their distribution and abundance due to global warming. However, we need to clearly understand the relationship between plants, birds and soil microorganisms. We therefore collected rhizosphere and bulk soils from six different sampling sites subjected to different levels of bird influence and colonized by Colobanthus quitensis and Deschampsia antarctica in the Admiralty Bay, King George Island, Maritime Antarctic. Microarray and qPCR assays targeting 16S rRNA genes of specific taxa were used to assess microbial community structure, composition and abundance and analyzed with a range of soil physico-chemical parameters. The results indicated significant rhizosphere effects in four out of the six sites, including areas with different levels of bird influence. Acidobacteria were significantly more abundant in soils with little bird influence (low nitrogen) and in bulk soil. In contrast, Actinobacteria were significantly more abundant in the rhizosphere of both plant species. At two of the sampling sites under strong bird influence (penguin colonies), Firmicutes were significantly more abundant in D. antarctica rhizosphere but not in C. quitensis rhizosphere. The Firmicutes were also positively and significantly correlated to the nitrogen concentrations in the soil. We conclude that the microbial communities in Antarctic soils are driven both by bird and plants, and that the effect is taxa-specific.

2012-06-01 | GSE33847 | GEO

Expression analysis of Pseudozyma antarctica T-34 and Ustilago maydis on different carbon source

2014-03-21 | E-GEOD-47171 | biostudies-arrayexpress

Deschampsia cespitosa

Project description:Deschampsia cespitosa overview

| PRJNA747582 | ENA