Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Batrachochytrium dendrobatidis

ABSTRACT: DNAseq of Batrachochytrium dendrobatidis at BGI (Farrer et al PLoS Genet 2013)

PROVIDER: PRJNA174850 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR643698_1.fastq.gz	Fastqsanger.gz
	SRR643698_2.fastq.gz	Fastqsanger.gz
	SRR643904_1.fastq.gz	Fastqsanger.gz
	SRR643904_2.fastq.gz	Fastqsanger.gz
	SRR643905_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 22

Similar Datasets

Batrachochytrium dendrobatidis

Project description:DNAseq of Batrachochytrium dendrobatidis (Farrer et al PLoS Genet 2013)

| PRJNA174849 | ENA

Batrachochytrium dendrobatidis

Project description:DNAseq of Batrachochytrium dendrobatidis (Farrer et al PNAS 2011)

| PRJNA222638 | ENA

Batrachochytrium dendrobatidis JEL423

Project description:RNAseq of Batrachochytrium dendrobatidis JEL423 in vitro (Farrer et al NatComm 2017)

| PRJNA326253 | ENA

Batrachochytrium dendrobatidis JEL423

Project description:Batrachochytrium dendrobatidis JEL423 Genome sequencing

| PRJNA1109278 | ENA

Transcriptomic Analysis of the Serratia marcescens Response to Batrachochytrium dendrobatidis

Project description:Global amphibian declines and extinction events are currently occurring at an unprecedented rate. While various factors are influencing these declines, one factor that is readily identifiable is disease. Specifically, the fungal pathogen Batrachochytrium dendrobatidis is thought to play a major role in amphibian declines in tropical and neotropical regions of the globe. While the effects of this chytrid fungus have been shown to be devastating, certain individuals and relict populations have shown resistance. This resistance has been attributed in part to the cutaneous microbiome. Many identified bacterial species that make up the microbiome have shown anti-B. dendrobatidis activity in vitro. One bacteria that is commonly associated as being a member of the amphibian microbiome across amphibian species and shows such anti-B. dendrobatidis activity is Serratia marcescens. Here, we look at transcriptomic shifts in gene expression of S. marcescens (high homology to strain WW4) in response to both live and heat-killed B. dendrobatidis.

2016-07-11 | GSE84057 | GEO

Common frog (Rana temporaria) transcriptomes following Exposure to Ranavirus and Batrachochytrium dendrobatidis

Project description:This experiment examined the transcriptional response of juvenile amphibian hosts (common frog, Rana temporaria) to two important amphibian pathogens: Batrachochytrium dendrobatidis (Bd) and Ranavirus. Common frogs are non-model organisms which do not have a reference genome.

2015-07-10 | E-MTAB-3632 | biostudies-arrayexpress

Batrachochytrium dendrobatidis JAM81

Project description:Batrachochytrium dendrobatidis JAM81 genome sequencing project

| PRJNA41157 | ENA

Batrachochytrium dendrobatidis strain:Section Line

Project description:Batrachochytrium dendrobatidis Genome resequencing

| PRJNA265883 | ENA

Transcription profiling of Xenopus tropicalis in response to infection by the chytrid Batrachochytrium dendrobatidis

Project description:Chytridiomycosis is an emerging infectious disease of amphibians caused by the chytrid Batrachochytrium dendrobatidis (Bd). The disease has been associated with global amphibian declines and is driving the species in the wild to extinction. Using DNA microarray technology we have analysed transcriptional changes in Xenopus tropicalis during the course (7 and 42 days) of infection by Bd under warm (26oC) and cold (18oC) temperatures.

2009-10-22 | E-MEXP-1936 | biostudies-arrayexpress

Batrachochytrium dendrobatidis strain:CLFT071

Project description:Batrachochytrium dendrobatidis CLFT071 Genome sequencing and assembly

| PRJNA913953 | ENA