Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Fossil metagenome

ABSTRACT: Neanderthal Genomic DNA from Vindija, Croatia

PROVIDER: PRJNA18311 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR253104.fastq.gz	Fastqsanger.gz
	SRR9434530.fastq.gz	Fastqsanger.gz
	SRR9434540.fastq.gz	Fastqsanger.gz
	SRR9434550.fastq.gz	Fastqsanger.gz
	SRR9434531.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 35

Similar Datasets

fossil metagenome

Project description:Neanderthal Genomic DNA from Vindija, Croatia

| PRJNA18313 | ENA

Vindija 33.19

Project description:A 30-fold coverage Vindija Neandertal genome from Croatia

| PRJEB21157 | ENA

fossil metagenome

Project description:Shotgun ancient DNA metagenome, tooth, Black Death victim #8291

| PRJNA239147 | ENA

fossil metagenome

Project description:Shotgun ancient DNA metagenome, intestine specimen, cholera victim #3090.13

| PRJNA239173 | ENA

fossil metagenome

Project description:Ancient DNA reveals multiple origins and migration waves of extinct Japanese brown bear lineages

| PRJDB8832 | ENA

fossil metagenome

Project description:Patterns of nucleotide misincorporations during enzymatic amplification and direct large-scale sequencing of ancient DNA.

| PRJNA17621 | ENA

Vindija 87

Project description:Vindija 87 nuclear DNA sequences

| PRJEB21882 | ENA

Neanderthal Metagenome

Project description:Neanderthal Metagenome

| PRJNA18309 | ENA

Increased Neanderthal ancestry in genomic regions associated with lipid catabolism in contemporary Europeans

Project description:While Neanderthals are extinct, fragments of their genome still persist in the genomes of contemporary humans. Here, we show that such Neanderthal-like sequences are not distributed randomly in contemporary human genomes. Specifically, while genome-wide frequency of Neanderthal-like sites is close to 6% in all out-of-Africa populations, genes involved in lipid catabolism contain large excess Neanderthal-like sequences in Europeans (24.3%), but not in Asians (12.4%). While lipid catabolism cannot be assayed in Neanderthals, we took advantage of genetic divergence between human populations, chimpanzees and Neanderthals to predict metabolic divergence expected from the observed excess of Neanderthal gene flow into Europeans. We confirmed predicted changes in lipid catabolism using hydrophobic metabolome measurements in the brain tissue and further linked these metabolic changes to gene expression divergence. 14 human and 6 chimpanzee samples were sequenced.

2014-03-31 | E-GEOD-45263 | biostudies-arrayexpress

fossil metagenome

Project description:Bacteria of ancient elephant teeth Raw sequence reads

| PRJNA1041588 | ENA