Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Rattus norvegicus strain:SS/JrNhsd

ABSTRACT: 0.01X whole genome shotgun assembly of strain SS/JrNhsd assembled by the European STAR Consortium

PROVIDER: PRJNA18691 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	AAXN01.dat.gz	Other
	AAXN01.fasta.gz	Fasta.gz
	AAXN01.master.dat	Other
	AAXN01.dat.gz	Other

Items per page:

1 - 4 of 4

Similar Datasets

Rattus norvegicus

Project description:0.01X assembly of a wild rat by the European STAR Consortium

| PRJNA18695 | ENA

Rattus norvegicus strain:GK/Ox

Project description:0.01X assembly of rat strain GK/Ox by the European STAR Consortium

| PRJNA18693 | ENA

Rattus norvegicus strain:SHRSP/Bbb

Project description:0.01X assembly of rat strain SHRSP/Bbb by the European STAR Consortium

| PRJNA18689 | ENA

Rattus norvegicus strain:WKY/Bbb

Project description:0.01X assembly of rat strain WKY/Bbb by the European STAR Consortium

| PRJNA18687 | ENA

Rattus norvegicus strain:SS/JrHsdMcwi

Project description:Rattus norvegicus strain:SS/JrHsdMcwi Transcriptome or Gene expression

| PRJNA448578 | ENA

Patterns of Gastrointestinal Helminth Infections in Rattus rattus, Rattus norvegicus, and Mus musculus in Chile

Project description:Few studies have assessed the patterns of parasite populations of rodents over a longitudinal gradient in Chile. In this work, the gastrointestinal helminthic fauna of invasive rodents in Chile was examined to assess the association between their presence/absence and abundance with latitude, host sex, and host body condition, and to assess the coexistence and correlation of the abundance between parasite species. Rodents were obtained from 20 localities between 33 and 43°S. Helminths were extracted from the gastrointestinal tract and identified morphologically. Overall, 13 helminth taxa were obtained. The most frequently identified parasite species was Heterakis spumosa, and the most abundant was Syphacia muris, while Physaloptera sp. was the most widely distributed. No locality presented with a coexistence that was different from that expected by chance, while the abundance of five helminthic species correlated with the abundance of another in at least one locality, most likely due to co-infection rather than interaction. Host sex was associated with parasite presence or abundance, and female sex-biased parasitism was notably observed in all cases. Body condition and latitude presented either a positive or negative association with the presence or abundance of parasites depending on the species. It is notable that the likely native Physaloptera sp. is widely distributed among invasive rodents. Further, gravid females were found, suggesting spillback of this species to the native fauna. The low frequency and abundance of highly zoonotic hymenolepid species suggest that rodents are of low concern regarding gastrointestinal zoonotic helminths.

| S-EPMC9277659 | biostudies-literature

Streptomyces sp. SS strain:SS

Project description:Streptomyces sp. SS strain:SS Genome sequencing and assembly

| PRJNA159633 | ENA

The social life of Norway rats (Rattus norvegicus).

Project description:The Norway rat has important impacts on our life. They are amongst the most used research subjects, resulting in ground-breaking advances. At the same time, wild rats live in close association with us, leading to various adverse interactions. In face of this relevance, it is surprising how little is known about their natural behaviour. While recent laboratory studies revealed their complex social skills, little is known about their social behaviour in the wild. An integration of these different scientific approaches is crucial to understand their social life, which will enable us to design more valid research paradigms, develop more effective management strategies, and to provide better welfare standards. Hence, I first summarise the literature on their natural social behaviour. Second, I provide an overview of recent developments concerning their social cognition. Third, I illustrate why an integration of these areas would be beneficial to optimise our interactions with them.

| S-EPMC7145424 | biostudies-literature

Kobuviruses carried by Rattus norvegicus in Guangdong, China.

Project description:BackgroundMurine kobuviruses (MuKV) are newly recognized picornaviruses first detected in murine rodents in the USA in 2011. Little information on MuKV epidemiology in murine rodents is available. Therefore, we conducted a survey of the prevalence and genomic characteristics of rat kobuvirus in Guangdong, China.ResultsFecal samples from 223 rats (Rattus norvegicus) were collected from Guangdong and kobuviruses were detected in 12.6% (28) of samples. Phylogenetic analysis based on partial 3D and complete VP1 sequence regions showed that rat kobuvirus obtained in this study were genetically closely related to those of rat/mouse kobuvirus reported in other geographical areas. Two near full-length rat kobuvirus genomes (MM33, GZ85) were acquired and phylogenetic analysis of these revealed that they shared very high nucleotide/amino acids identity with one another (95.4%/99.4%) and a sewage-derived sequence (86.9%/93.5% and 87.5%/93.7%, respectively). Comparison with original Aichivirus A strains, such human kobuvirus, revealed amino acid identity values of approximately 80%.ConclusionOur findings indicate that rat kobuvirus have distinctive genetic characteristics from other Aichivirus A viruses. Additionally, rat kobuvirus may spread via sewage.

| S-EPMC7161169 | biostudies-literature

Candidatus Nitrosocosmicus sp. SS strain:SS

Project description:Candidatus Nitrosocosmicus sp. SS strain:SS Genome sequencing and assembly

| PRJNA530818 | ENA