Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Agave tequilana strain:Weber azul

ABSTRACT: Agave tequilana strain:Weber azul Transcriptome or Gene expression

PROVIDER: PRJNA193469 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR789688_1.fastq.gz	Fastqsanger.gz
	SRR789688_2.fastq.gz	Fastqsanger.gz
	SRR789689_1.fastq.gz	Fastqsanger.gz
	SRR789689_2.fastq.gz	Fastqsanger.gz
	SRR789695_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 96

Similar Datasets

Agave tequilana

Project description:Agave tequilana

| PRJNA1010103 | ENA

Agave tequilana

Project description:Agave tequilana Genome sequencing

| PRJNA253745 | ENA

Agave tequilana

Project description:Agave tequilana Organism overview

| PRJNA273655 | ENA

Agave tequilana

Project description:Agave tequilana Raw sequence reads

| PRJNA507288 | ENA

Project description:Conservation genomics of Agave tequilana Weber var. azul

| PRJNA859004 | ENA

Agave strain vs wine strain

Project description:We studied transcriptional responses comparing an Agave strain ITD00185 with a wine strain T73 in a synthetic agave must

2017-03-01 | GSE95507 | GEO

Agave tequilana var. Weber's Blue HAP2

Project description:Agave tequilana var. Weber's Blue HAP2 Standard Draft

| PRJNA566715 | ENA

Untargeted metabolomics study of the effects of phyllosphere synthetic communities on agave tequilana

Project description:We performed an untargeted metabolomic analysis on agave tequilana leaves treated with two phyllosphere synthetic microbial communities (PSMC) using LC-HR-MS/MS. Data-Dependent Acquisition was employed under positive ionization mode. Three cohorts were included; a) non-treated plants; b) treated plants with PFCS (a type of PSMC), and; c) treated plants with PFCT (a type of PSMC). Metabolites were extracted with a solvent mixture of acetonitrile:methanol:ethyl acetate (1:1:1).

2022-04-29 | MSV000089335 | MassIVE

Thermoplastic Starch Biocomposite Films Reinforced with Nanocellulose from <i>Agave tequilana</i> Weber var. Azul Bagasse.

Project description:In this work, cellulose nanocrystals (CNCs), bleached cellulose nanofibers (bCNFs), and unbleached cellulose nanofibers (ubCNFs) isolated by acid hydrolysis from Agave tequilana Weber var. Azul bagasse, an agro-waste from the tequila industry, were used as reinforcements in a thermoplastic starch matrix to obtain environmentally friendly materials that can substitute contaminant polymers. A robust characterization of starting materials and biocomposites was carried out. Biocomposite mechanical, thermal, and antibacterial properties were evaluated, as well as color, crystallinity, morphology, rugosity, lateral texture, electrical conductivity, chemical identity, solubility, and water vapor permeability. Pulp fibers and nanocelluloses were analyzed via SEM, TEM, and AFM. The water vapor permeability (WVP) decreased by up to 20.69% with the presence of CNCs. The solubility decreases with the presence of CNFs and CNCs. The addition of CNCs and CNFs increased the tensile strength and Young's modulus and decreased the elongation at break. Biocomposites prepared with ubCNF showed the best tensile mechanical properties due to a better adhesion with the matrix. Images of bCNF-based biocomposites demonstrated that bCNFs are good reinforcing agents as the fibers were dispersed within the starch film and embedded within the matrix. Roughness increased with CNF content and decreased with CNC content. Films with CNCs did not show bacterial growth for Staphylococcus aureus and Escherichia coli. This study offers a new theoretical basis since it demonstrates that different proportions of bleached or unbleached nanofibers and nanocrystals can improve the properties of starch films.

| S-EPMC10534575 | biostudies-literature

Localization and Composition of Fructans in Stem and Rhizome of <i>Agave tequilana</i> Weber var. azul.

Project description:Methodology combining mass spectrometry imaging (MSI) with ion mobility separation (IMS) has emerged as a biological imaging technique due to its versatility, sensitivity and label-free approach. This technique has been shown to separate isomeric compounds such as lipids, amino acids, carboxylic acids and carbohydrates. This report describes mass spectrometry imaging in combination with traveling-wave ion mobility separation and matrix-assisted laser desorption/ionization (MALDI). Positive ionization mode was used to locate fructans on tissue printed sections of Agave rhizome and stem tissue and distinguished fructan isoforms. Here we show the location of fructans ranging from DP3 to DP17 to be differentially abundant across the stem tissue and for the first time, experimental collision cross sections of endogenous fructan structures have been collected, revealing at least two isoforms for fructans of DP4, DP5, DP6, DP7, DP8, DP10, and DP11. This demonstrates that complex fructans such as agavins can be located and their isoforms resolved using a combination of MALDI, IMS, and MSI, without the need for extraction or derivatization. Use of this methodology uncovered patterns of fructan localization consistent with functional differences where higher DP fructans are found toward the central section of the stem supporting a role in long term carbohydrate storage whereas lower DP fructans are concentrated in the highly vascularized central core of rhizomes supporting a role in mobilization of carbohydrates from the mother plant to developing offsets. Tissue specific patterns of expression of genes encoding enzymes involved in fructan metabolism are consistent with fructan structures and localization.

| S-EPMC7855178 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data