Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Ipomoea batatas

ABSTRACT: Small RNAs from sweet potato upon wounding

PROVIDER: PRJNA200555 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR835908.fastq.gz	Fastqsanger.gz
	SRR835909.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

Ipomoea batatas

Project description:ddRAD-Seq for sweet potato

| PRJDB4946 | ENA

Proteomics and proteogenomics analysis of sweet potato (Ipomoea batatas) leaf and root

Project description:Two complementary protein extraction methodologies coupled with an automated proteomic platform were employed to analyze tissue-specific proteomes and characterize biological and metabolic processes in sweet potato. A total of 74,255 peptides corresponding to 4,321 nonredundant proteins were successfully identified. Data were compared to predicted protein accessions for Ipomea species and mapped on the sweet potato transcriptome and haplotype-resolved genome. A proteogenomics analysis successfully mapped 12,902 peptides against the transcriptome or genome, representing 90.4% of the total 14,275 uniquely identified peptides, predicted 741 new protein-coding genes, and specified 2726 loci where annotations can be further improved. Overall, 39,916 peptides mapped to 3,143 unique proteins in leaves, and 34,339 peptides mapped to 2,928 unique proteins in roots; 32% and 27% unique identified proteins were leaves- and roots-specific, respectively.

2019-05-30 | PXD012999 | Pride

Ipomoea batatas

Project description:Gene expression profiling during storage root formation in sweet potato

| PRJNA110579 | ENA

Ipomoea batatas

Project description:Transcriptome analyses reflect the molecular mechanism of drought tolerance in sweet potato

| PRJNA1039563 | ENA

Ipomoea batatas

Project description:Gene expression after SPVD infection in resistant and susceptible sweet potato cultivars

| PRJNA121123 | ENA

Ipomoea batatas

Project description:Sequencing of active retrotransposon (Rtsp-1 and LIb) insertion site in sweet potato

| PRJDB1599 | ENA

Ipomoea batatas

Project description:Transcriptome profiling and digital gene expression analysis of sweet potato challenged with Fusarium oxysporum f. sp.batatas.

| PRJNA351255 | ENA

Ipomoea batatas cultivar:Xushu18

Project description:Comprehensive Transcriptional Expression Profile of sweet potato (Cultivar Xushu18)

| PRJNA511028 | ENA

Small RNAs deep sequencing from sweet potato in wounding stress

Project description:Small RNAs deep sequencing from sweet potato in wounding stress

| PRJNA474012 | ENA

Ipomoea batatas strain:cultivar: Xushu 18

Project description:Sweet potato is a tuberous perennial

| PRJNA73787 | ENA