Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Paenarthrobacter nicotinovorans

ABSTRACT: Arthrobacter nicotinovorans overview

PROVIDER: PRJNA203352 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR1796743_1.fastq.gz	Fastqsanger.gz
	SRR1796743_2.fastq.gz	Fastqsanger.gz
	SRR1797166_1.fastq.gz	Fastqsanger.gz
	SRR1797166_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 10

Similar Datasets

Paenarthrobacter nicotinovorans

Project description:Arthrobacter nicotinovorans

| PRJDB4758 | ENA

Paenarthrobacter nicotinovorans 26Cvi1.1E

Project description:Arthrobacter nicotinovorans 26Cvi1.1E

| PRJNA188835 | ENA

Paenarthrobacter nicotinovorans strain:25_8

Project description:Arthrobacter nicotinovorans 25_8 genome sequencing

| PRJNA463433 | ENA

Paenarthrobacter nicotinovorans pAO1 proteome growing on nicotine

Project description:The shotgun proteomics approach attempts to identify the proteins expressed by Paenarthrobacter (formerly Arthrobacter) nicotinovorans in the presence of nicotine by using nanoLCMSMS. A total of 792 non redundant proteins were identified when P. nicotinovorans was grown in on citrate, nicotine and citrate and nicotine as the only carbon source.

2018-01-25 | MSV000081968 | MassIVE

Transcriptomic analysis of Paenarthrobacter nicotinovorans ATCC 49919 nicotine metabolism

Project description:Paenarthrobacter nicotinovorans pAO1 is a nicotine degrading microorganism that shows promising applications in converting nicotine-containing waste into useful green chemicals. Its biotechnological applications are nevertheless hampered by the lack of knowledge and tools to perform genetic and metabolic engineering. The objective of the work is to provide the first transcriptome of the strain and is a second step in our envisioned complete omics characterization of nicotine metabolism in P. nicotinovorans ATCC 49919. Acknowledgements. This work was supported by a grant of the Romanian Ministry of Education and Research, CNCS - UEFISCDI, project number PN-III-P4-ID-PCE-2020-0656, within PNCDI III.

2023-08-07 | GSE240220 | GEO

Transcriptomic analysis of Paenarthrobacter nicotinovorans ATCC 49919 nicotine metabolism [2]

2024-11-26 | GSE279035 | GEO

Paenarthrobacter nicotinovorans

Project description:Paenarthrobacter nicotinovorans Genome sequencing and assembly

| PRJNA1172378 | ENA

Paenarthrobacter nicotinovorans UNCCL28

Project description:Paenarthrobacter nicotinovorans UNCCL28 genome sequencing

| PRJNA248491 | ENA

Paenarthrobacter nicotinovorans 231Sha2.1M6

Project description:Paenarthrobacter nicotinovorans 231Sha2.1M6 Genome sequencing and assembly

| PRJNA195858 | ENA

Time-dependent analysis of Paenarthrobacter nicotinovorans pAO1 nicotine-related proteome

Project description:We used nanoLC–MS/MS in a shotgun proteomics approach in order to identify the proteins expressed by P. nicotinovorans in the presence of nicotine at 3 different time intervals: 7, 10 and 24 hours post inoculation. A total of 915 proteins grouped 584 non-redundant clusters in were identified with an FDR of 0.3% when P. nicotinovorans was grown in on citrate medium alone and on citrate supplemented 0.05% nicotine. The differences in protein expression pattens at different time intervals allows us have a more dynamic picture on how the nicotine catabolic pathway is activated and to related it to the appearance of the known metabolic intermediates.

2021-06-01 | PXD012577 | Pride

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data