Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Homo sapiens

ABSTRACT: mRNA and RNC-mRNA deep sequencing of three hepatocellular carcinoma cell lines

PROVIDER: PRJNA215765 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR953772.fastq.gz	Fastqsanger.gz
	SRR953773.fastq.gz	Fastqsanger.gz
	SRR953774.fastq.gz	Fastqsanger.gz
	SRR953775.fastq.gz	Fastqsanger.gz
	SRR953776.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 6

Similar Datasets

mRNA and RNC-mRNA deep sequencing of three hepatocellular carcinoma cell lines

Project description:We sequenced the total mRNA and translating mRNA (RNC-mRNA) of three hepatocellular carcinoma cell lines Hep3B, HCCLM3 and MHCC97H

2014-02-18 | GSE49994 | GEO

mRNA and RNC-mRNA deep sequencing of three hepatocellular carcinoma cell lines

Project description:We sequenced the total mRNA and translating mRNA (RNC-mRNA) of three hepatocellular carcinoma cell lines Hep3B, HCCLM3 and MHCC97H For each cell line, samples prepared from three independent and identical cell cultures were pooled with equal amounts. C-HPP China Team

2014-02-18 | E-GEOD-49994 | biostudies-arrayexpress

Homo sapiens

Project description:Gene expression of three hepatocellular carcinoma cell lines with different organ-tropism.

| PRJNA169359 | ENA

Homo sapiens

Project description:Small RNAs expression of three hepatocellular carcinoma cell lines with different organ-tropism.

| PRJNA169670 | ENA

Homo sapiens

Project description:Hepatocellular carcinoma (HCC) tumors and cell lines

| PRJNA127971 | ENA

Homo sapiens

Project description:RNA sequencing in LSD1 knockout hepatocellular carcinoma cell lines

| PRJDB8931 | ENA

De novo assembled individual genome does not show advantage against standard reference genome: a demonstration of Chinese Han Population

Project description:We compared standard human reference genome GRCh38 and de novo assembled reference genome HX1 in precision medicine applications for specific ethnics. In order to quantify the HX1 misassembled genes and HX1-specific contigs, we performed RNA-seq and RNC-seq on hepatocellular carcinoma cell lines (MHCC97H, MHCCLM3 and MHCCLM6) which were derived from Chinese Han individuals. In which, RNC-seq datasets of MHCC97H and MHCCLM3 had been published. We found that a considerable fraction of HX1 misassembled genes was expressed in the Chinese Han samples. Furthermore, we found no HX1-specific contigs yielded more than 2.27 FPKM (minimun FPKM of 1 copy/cell transcript) in the Chinese Han sampels.

2019-06-01 | GSE121013 | GEO

Homo sapiens

Project description:mRNA profiling of Hepatocellular carcinoma (HCC)

| PRJNA243866 | ENA

Homo sapiens

Project description:Deep sequencing of the transcriptome of three human cell lines

| PRJNA79633 | ENA

mRNA-seq analysis of mouse hepatocellular carcinoma cell lines

Project description:mRNA-seq analysis of mouse hepatocellular carcinoma cell lines

| PRJNA782911 | ENA