Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Helicobacter pametensis ATCC 51478

ABSTRACT: Helicobacter pametensis ATCC 51478 Genome sequencing and assembly

PROVIDER: PRJNA223085 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR1801762_1.fastq.gz	Fastqsanger.gz
	SRR1801762_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 3 of 3

Similar Datasets

Helicobacter rodentium ATCC 700285

Project description:Helicobacter rodentium ATCC 700285 Genome sequencing and assembly

| PRJNA234774 | ENA

Helicobacter bilis ATCC 51630

Project description:Helicobacter bilis ATCC 51630 Genome sequencing and assembly

| PRJNA223061 | ENA

Helicobacter bilis ATCC 51630

Project description:Helicobacter bilis ATCC 51630 Genome sequencing and assembly

| PRJNA232570 | ENA

Helicobacter felis ATCC 49179

Project description:Helicobacter felis ATCC 49179 genome sequencing

| PRJEA61189 | ENA

Helicobacter canis strain:ATCC 51401 | isolate:ATCC 51401

Project description:Helicobacter canis ATCC 51401 genome sequencing

| PRJNA346670 | ENA

RNA-seq analysis of Helicobacter cinaedi ATCC BAA-847 under microaerobic and aerobic culture conditions

Project description:Helicobacter cinaedi is an emerging bacterial pathogen of immunosuppressed individuals. The species is traditionally thought to require an H2-enhanced microaerobic atmosphere for growth, although it can proliferate under aerobic conditions when co-cultured with epithelial monolayers or supplemented with certain metabolites (notably, L-lactate). The goal of this experiment was to assess the global transcription changes that occur in the H. cinaedi type strain (ATCC BAA-847) under various media and atmospheric conditions. These include bacterial monoculture, as well as co-culture with Caco-2 intestinal epithelial cells. In total, Illumina mRNA-seq (stranded, paired-end) was performed on H. cinaedi grown under 9 in vitro culture conditions (4-5 biologic replicates per condition).

2016-09-19 | E-MTAB-5062 | biostudies-arrayexpress

Helicobacter cinaedi CCUG 18818 = ATCC BAA-847

Project description:Complete genome sequence of Helicobacter cinaedi ATCC BAA-487

| PRJDB113 | ENA

Helicobacter

Project description:Helicobacter Genome sequencing and assembly

| PRJNA344861 | ENA

Helicobacter pylori NCTC 11637 = CCUG 17874 = ATCC 43504 = JCM 12093

Project description:Helicobacter pylori NCTC 11637 = CCUG 17874 = ATCC 43504 = JCM 12093 Genome sequencing and assembly

| PRJNA76569 | ENA

Gene expression profiling of gastric cells infected by Helicobacter pylori

Project description:Helicobacter pylori are gram-negative bacteria that colonize the human stomach and are the major etiological factor in gastric carcinoma development. The aim of this work was to evaluate changes in gene expression in gastric cells induced by H. pylori. The human gastric carcinoma-derived cell line AGS was infected with H. pylori strain 60190 (ATCC 49503) for 24 hours. RNA was extracted from three independent experiments.

2016-03-01 | E-GEOD-70394 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data