Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Mus musculus

ABSTRACT: Gene expression in thymic epithelial cells [RNA-seq]

PROVIDER: PRJNA230859 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR1045010.fastq.gz	Fastqsanger.gz
	SRR1045020.fastq.gz	Fastqsanger.gz
	SRR1045011.fastq.gz	Fastqsanger.gz
	SRR1045021.fastq.gz	Fastqsanger.gz
	SRR1045012.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 14

Similar Datasets

RNA sequencing of Mus musculus thymic lymphomas

Project description:RNA sequencing of Mus musculus thymic lymphomas

2019-06-06 | GSE85894 | GEO

Mus musculus

Project description:Single cell RNA-seq analysis of mature thymic epithelial cells

| PRJNA257979 | ENA

Mus musculus

Project description:microRNA expression in thymic epithelial cells

| PRJNA283357 | ENA

RNA sequencing of Mus musculus thymic lymphomas [ATM and RAG2]

Project description:RNA sequencing of Mus musculus thymic lymphomas

2020-12-30 | GSE121739 | GEO

Mus musculus

Project description:Chromatin state in thymic epithelial cells [ChIP-seq]

| PRJNA230858 | ENA

Mus musculus cornea experiment

Project description:PURPOSE: To provide a detailed gene expression profile of the normal postnatal mouse cornea. METHODS: Serial analysis of gene expression (SAGE) was performed on postnatal day (PN)9 and adult mouse (6 week) total corneas. The expression of selected genes was analyzed by in situ hybridization. RESULTS: A total of 64,272 PN9 and 62,206 adult tags were sequenced. Mouse corneal transcriptomes are composed of at least 19,544 and 18,509 unique mRNAs, respectively. One third of the unique tags were expressed at both stages, whereas a third was identified exclusively in PN9 or adult corneas. Three hundred thirty-four PN9 and 339 adult tags were enriched more than fivefold over other published nonocular libraries. Abundant transcripts were associated with metabolic functions, redox activities, and barrier integrity. Three members of the Ly-6/uPAR family whose functions are unknown in the cornea constitute more than 1% of the total mRNA. Aquaporin 5, epithelial membrane protein and glutathione-S-transferase (GST) omega-1, and GST alpha-4 mRNAs were preferentially expressed in distinct corneal epithelial layers, providing new markers for stratification. More than 200 tags were differentially expressed, of which 25 mediate transcription. CONCLUSIONS: In addition to providing a detailed profile of expressed genes in the PN9 and mature mouse cornea, the present SAGE data demonstrate dynamic changes in gene expression after eye opening and provide new probes for exploring corneal epithelial cell stratification, development, and function and for exploring the intricate relationship between programmed and environmentally induced gene expression in the cornea. Keywords: other

2004-01-02 | GSE887 | GEO

Mus musculus

Project description:Expression data from meduallar thymic epithelial cells and thymic or splenic B cells

| PRJNA354356 | ENA

Mus musculus

Project description:Gene Expression Data from Adult and Embryo Thymic Epithelial Cells (TEC)

| PRJNA321529 | ENA

Mus musculus

Project description:RNA-seq profiling of thymic epithelial cells from Mcl1 knockout and wildtype mice

| PRJNA397054 | ENA

Mus musculus

Project description:Gene expression profiling of perinatal or adult medullary thymic epithelial cells (MECs)