Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Mus musculus

ABSTRACT: Single cell RNA-seq analysis of mature thymic epithelial cells

PROVIDER: PRJNA257979 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR1542750_1.fastq.gz	Fastqsanger.gz
	SRR1542750_2.fastq.gz	Fastqsanger.gz
	SRR1542760_1.fastq.gz	Fastqsanger.gz
	SRR1542760_2.fastq.gz	Fastqsanger.gz
	SRR1542770_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 348

Similar Datasets

Mus musculus

Project description:Single cell analysis of thymic epithelial cells

| PRJDB8838 | ENA

Mus musculus

Project description:Single cell transcriptomic analysis of thymic epithelial cells

| PRJNA289723 | ENA

Mus musculus

Project description:Single cell ATAC sequence analysis of thymic epithelial cells

| PRJDB13399 | ENA

Mus musculus

Project description:Single cell analysis of transit-amplifying thymic epithelial cells

| PRJDB11896 | ENA

RNA sequencing of Mus musculus thymic lymphomas

Project description:RNA sequencing of Mus musculus thymic lymphomas

2019-06-06 | GSE85894 | GEO

Mus musculus strain:CD57BL/6

Project description:Single cell ATAC sequence analysis of thymic epithelial cells

| PRJDB11901 | ENA

Mus musculus cornea experiment

Project description:PURPOSE: To provide a detailed gene expression profile of the normal postnatal mouse cornea. METHODS: Serial analysis of gene expression (SAGE) was performed on postnatal day (PN)9 and adult mouse (6 week) total corneas. The expression of selected genes was analyzed by in situ hybridization. RESULTS: A total of 64,272 PN9 and 62,206 adult tags were sequenced. Mouse corneal transcriptomes are composed of at least 19,544 and 18,509 unique mRNAs, respectively. One third of the unique tags were expressed at both stages, whereas a third was identified exclusively in PN9 or adult corneas. Three hundred thirty-four PN9 and 339 adult tags were enriched more than fivefold over other published nonocular libraries. Abundant transcripts were associated with metabolic functions, redox activities, and barrier integrity. Three members of the Ly-6/uPAR family whose functions are unknown in the cornea constitute more than 1% of the total mRNA. Aquaporin 5, epithelial membrane protein and glutathione-S-transferase (GST) omega-1, and GST alpha-4 mRNAs were preferentially expressed in distinct corneal epithelial layers, providing new markers for stratification. More than 200 tags were differentially expressed, of which 25 mediate transcription. CONCLUSIONS: In addition to providing a detailed profile of expressed genes in the PN9 and mature mouse cornea, the present SAGE data demonstrate dynamic changes in gene expression after eye opening and provide new probes for exploring corneal epithelial cell stratification, development, and function and for exploring the intricate relationship between programmed and environmentally induced gene expression in the cornea. Keywords: other

2004-01-02 | GSE887 | GEO

RNA sequencing of Mus musculus thymic lymphomas [ATM and RAG2]

Project description:RNA sequencing of Mus musculus thymic lymphomas

2020-12-30 | GSE121739 | GEO

Mus musculus

Project description:Gene expression in thymic epithelial cells [RNA-seq]

| PRJNA230859 | ENA

Single cell RNA-seq analysis of mature thymic epithelial cells

Project description:This study set out to assay the (polyA+) transcriptomes of single mature (MHCII high) mouse medullary thymic epithelial cells (mTEC). Following isolation by FACs, the transcriptomes of single mature mTEC was assayed using the Fluidigm C1 microfluidics platform and Illumina RNA-seq.

2014-09-04 | E-GEOD-60297 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data