Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Mus musculus

ABSTRACT: RNAseq analysis of mature thymic NKT cells and immature thymic DN1eP cells

PROVIDER: PRJNA231006 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR1046000.fastq.gz	Fastqsanger.gz
	SRR1046010.fastq.gz	Fastqsanger.gz
	SRR1046020.fastq.gz	Fastqsanger.gz
	SRR1046001.fastq.gz	Fastqsanger.gz
	SRR1046011.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 26

Similar Datasets

Mus musculus

Project description:Mature thymic NKT and T cells

| PRJNA116935 | ENA

RNAseq analysis of mature thymic NKT cells and immature thymic DN1eP cells

Project description:We report the identification of immature thymic CD4(-),CD8(-) double-negative (DN)1e cells with the NKT cell lineage potential. We also analyzed the gene expression profiles of DN1e thymocytes compared with those of mature thymic NKT cell developmental stages termed NKT stage-1, 2, and -3, which are characterized by differential expression levels of NK1.1 and CD44 antigens in C57BL/6 mouse strain. Next generation sequencing of total transcriptomes using total RNA isolated from FACS sorted ex vivo thymic DN1eP (Lin-/CD44+/CD25-/CD24low/CD5+/CD27+/Ly108-/CXCR3+) fraction, and mature thymic alphaGalCer-loaded CD1d dimer+TCRbeta+ NKT cell developmental stage-1 (CD44-/NK1.1-), stage-2 (CD44+/NK1.1-), and stage-3 (CD44+/NK1.1+) cells.

2015-12-31 | E-GEOD-53150 | biostudies-arrayexpress

RNAseq analysis of mature thymic NKT cells and immature thymic DN1eP cells

2015-12-31 | GSE53150 | GEO

The transcriptomic landscape of MAIT cell development in the thymus (C006 RNAseq data set)

Project description:We report the transcriptomic landscape of MAIT cell development by examining thymic immature stage 1 and mature stage 3 MAIT cells from mouse thymus, and thymic immature stage 1, stage 2 mature stage 3 MAIT cells from human thymus using RNAseq.

2019-09-26 | GSE137349 | GEO

The transcriptomic landscape of MAIT cell development in the thymus (NN41 RNAseq data set)

2019-09-26 | GSE137347 | GEO

Mus musculus

Project description:Single cell RNA-seq analysis of mature thymic epithelial cells

| PRJNA257979 | ENA

Mus musculus

Project description:Transcriptional analysis of BCR-triggered immature and mature mouse B cells

| PRJNA102805 | ENA

RNA sequencing of Mus musculus thymic lymphomas

Project description:RNA sequencing of Mus musculus thymic lymphomas

2019-06-06 | GSE85894 | GEO

Mus musculus

Project description:Gene expression comparison of wild-type and IL15ko thymic NKT cells

| PRJNA147009 | ENA

A comparison of the transcriptional profiles of DP CD24highCD44lowNK1.1-CD1d-tet+TCRa+ cells (i.e. very immature NKT cells) with those of more mature NKT cell subsets

Project description:Type 1 NKT cells play a critical role in controlling the strength and character of adaptive and innate immune responses. Their functional characteristics are distinct from conventional T cells, and are induced by a transcriptional program initiated by positive selection on CD4+CD8+ (double positive, DP) thymocytes. Here we examined transcriptional events in four immature thymic NKT cell subsets in a novel Vα14 TCR transgenic strain bearing greatly expanded numbers of CD24+CD44- NKT cells. We used a transcriptional regulatory network approach to map TCR validation to the transition from DP T to DP NKT cells, and positive selection and lineage commitment to the transition from DP NKT to CD4 NKT

2021-12-15 | GSE106720 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data