Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Danio rerio

ABSTRACT: Transcriptomic analyses of Myc and xmrk induced zebrafish liver cancer

PROVIDER: PRJNA231764 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR1050714.fastq.gz	Fastqsanger.gz
	SRR1050715.fastq.gz	Fastqsanger.gz
	SRR1050716.fastq.gz	Fastqsanger.gz
	SRR1050717.fastq.gz	Fastqsanger.gz
	SRR1050718.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 6

Similar Datasets

Danio rerio

Project description:Transcriptomic analyses of Myc-induced zebrafish liver cancer

| PRJNA174800 | ENA

Danio rerio

Project description:Transcriptomic analyses of Kras induced zebrafish liver cancer

| PRJNA362941 | ENA

Danio rerio

Project description:Transcriptomic analyses of Kras induced zebrafish liver cancer

| PRJNA232516 | ENA

Danio rerio

Project description:Transcriptomic analyses of TCDD treated zebrafish liver

| PRJNA215326 | ENA

Danio rerio

Project description:Trancriptome Kinetics of Arsenic-induced Adaptive Response in Zebrafish Liver.

| PRJNA93067 | ENA

Danio rerio strain:AB

Project description:Transcriptomic analysis of GD treated zebrafish liver

| PRJNA691414 | ENA

Danio rerio

Project description:zebrafish liver tumor signatures

| PRJNA142817 | ENA

Danio rerio

Project description:Evolution of monoclonal zebrafish Myc-induced T-ALL, assessed by copy number variant analysis

| PRJNA236611 | ENA

Effect of obesity on liver immune response to inflammatory stimuli in a diet-obesity model of zebrafish (Danio rerio)

Project description:We used a Diet-Induced-Obesity approach using the zebrafish (Danio rerio) based on overfeeding to analyze the liver transcriptomic modulation in the disease and to determine how the obesity affects the immune response against an acute inflammatory stimulus as the lipopolysacharide (LPS). Overfed zebrafish were obese and showed signs of steatosis in their liver. Furthermore, the gene modulation profile resembled to that observed in humans. After the inflammatory stimulus, there was a clear differential immune response in normal and overfed fish. In normal fish, the response to LPS reported a typical host defensive reaction comparable to the one occurring in stimulated mammals whereas there was not any significantly modulated gene when comparing the expression of liver from LPS-stimulated with non-stimulated obese zebrafish.

2015-03-23 | GSE56478 | GEO

Transcriptomic analyses of Myc-induced zebrafish liver cancer

Project description:To study the characteristics and mechanisms of Myc-induced zebrafish liver tumor, next-generation sequencing-based SAGE analyses were used to examine the transcriptomes of tumor and control samples. The results indicated that ribosome proteins were overwhelmingly up-regulated in the Myc-induced liver tumors. Cross-species analyses showed that the zebrafish Myc model correlated well with Myc transgenic mouse models for liver cancers. The Myc-induced zebrafish liver tumors also possessed molecular signatures highly similar to human hepatocellular carcinoma (HCC). Thus, our zebrafish model demonstrated the conserved role of Myc in promoting hepatocarcinogenesis in all vertebrate species.

2013-04-02 | GSE40745 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data