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Burkholderia pseudomallei strain:BEF

ABSTRACT: Burkholderia pseudomallei strain:BEF Genome sequencing and assembly

PROVIDER: PRJNA244400 | ENA |

REPOSITORIES: ENA

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Dataset's files

Source:

			Action	DRS
	JPNR01.dat.gz	Other
	JPNR01.fasta.gz	Fasta.gz
	JPNR01.master.dat	Other
	SRR3226394.fastq.gz	Fastqsanger.gz
	SRR3226394_1.fastq.gz	Fastqsanger.gz

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Methylome sequencing of Burkholderia pseudomallei strains Bp33 and Bp35

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Project description:Bacterial transcriptomes are dynamic, context-specific and condition-dependent. Infection by the soil bacterium, Burkholderia pseudomallei, causes melioidosis, an often fatal infectious disease of humans and animals. Possessing a large multi-chromosomal genome, B. pseudomallei is able to persist and survive in a multitude of environments. To obtain a comprehensive overview of B. pseudomallei expressed transcripts, we initiated whole-genome transcriptome profiling covering a broad spectrum of conditions and exposures – a so-called “condition compendium”. Using the compendium, we confirmed many previously-annotated genes and operons, and also identified hundreds of novel transcripts including anti-sense transcripts and non-coding RNAs. By systematically examining genes exhibiting highly similar expression patterns, we ascribed putative functions to previously uncharacterized genes, and identified novel regulatory elements controlling these expression patterns. We also used the compendium to elucidate candidate virulence pathways associated with quorum-sensing and infection in mice. Our study showcases the power of a B. pseudomallei condition compendium as a valuable resource for understanding microbial physiology and the pathogenesis of melioidosis.

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