Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Sphingobium faniae strain:CGMCC 1.7749

ABSTRACT: Sphingobium faniae strain:CGMCC 1.7749 Genome sequencing

PROVIDER: PRJNA255616 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR4129106_1.fastq.gz	Fastqsanger.gz
	SRR4129106_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

Sphingobium wenxiniae strain:CGMCC 1.7748

Project description:Sphingobium wenxiniae strain:CGMCC 1.7748 Genome sequencing and assembly

| PRJNA255621 | ENA

Sphingobium Nickel resistance analysis by RNA-seq approach

Project description:Nickel is an essential component of many eukaryotic and prokaryotic metallo-enzymes. Due to its employment in many industrial applications, wastewaters from industrial plants often contain millimolar concentrations of Ni2+ that are toxic and life-threatening for many organism. Several lines of preliminary evidence suggest that members of the genus Sphingobium are able to grow in the presence of high concentrations of metal ions. We have isolated a novel Sphingobium strain (sp. ba1) able to grow in the presence of high concentrations (up to 20 mM) of NiCl2. Sequencing of its genome allowed the identification of several genes coding for proteins potentially involved in efflux-mediated resistance mechanisms. Here we use the RNA-seq approach to analyze the response of the Sphingobium sp. ba1 strain to high concentrations (10 mM) of Ni ions. Transcriptomic data show the differential expression of about one-hundred and twenty genes, most of which are up-regulated and encode proteins such as membrane proteins and components of metal efflux systems, enzymes involved in oxidative stress responses (catalases, peroxidases) and signal transduction systems.

2017-07-03 | E-MTAB-5828 | biostudies-arrayexpress

Sphingobium indicum B90A nLC-MS/MS

Project description:The project aims to to understand the response of the lin genes in Sphingobium indicum B90A under the stress of HCH isomers and the metabolites formed during degradation of hexachlorocyclohexane (HCH). Entire cell proteome from Sphingobium indicum B90A was extracted in presence of four HCH isomers. Quantitative proteomics confirmed the constitutive expression of the linA, linB and linC genes of the HCH degradation pathway crucial for the initiation of HCH isomers degradation. LinM and LinN were upregulated in the presence of β- and δ-isomers suggested the important role of ABC transporter system in the depletion of β- and δ-HCH. Besides this HCH isomers induced oxidative stress caused systemic changes in strain B90A proteome.

2021-04-06 | PXD018599 | Pride

Sphingobium yanoikuyae strain:A3

Project description:Sphingobium yanoikuyae strain:A3 Genome sequencing

| PRJNA649365 | ENA

Sphingobium yanoikuyae strain:SHJ

Project description:Sphingobium yanoikuyae strain:SHJ Genome sequencing

| PRJNA239177 | ENA

Sphingobium yanoikuyae strain:MH13

Project description:Sphingobium yanoikuyae strain:MH13 Genome sequencing

| PRJNA244116 | ENA

Sphingobium herbicidovorans strain:MH

Project description:Sphingobium herbicidovorans strain:MH Genome sequencing

| PRJNA380772 | ENA

Sphingobium phenoxybenzoativorans strain:Tas13

Project description:Sphingobium phenoxybenzoativorans strain:Tas13 Genome sequencing

| PRJNA725594 | ENA

phbC plays an important role in curdlan biosynthesis of Agrobacterium sp. CGMCC 11546

Project description:Purpose： The goal of this study is compare the effect of phbC gene in curdlan synthesis in Agrobacterium sp. CGMCC 11546. methods: The transcriptional and metabolomics analysis the function of phbC in Agrobacterium sp. CGMCC 11546. Results:The transcriptional and metabolomics showed that the decrease of curdlan production in the ΔphbC mutants may be caused by the insufficient supply of energy ATP conclusion:phbC play an important role in curdlan synthesis in Agrobacterium sp. CGMCC 11546

2022-06-30 | GSE153504 | GEO

Sphingobium bisphenolivorans strain:YL23

Project description:Sphingobium bisphenolivorans strain:YL23 Genome sequencing and assembly

| PRJNA203681 | ENA