Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Vibrio cholerae 2740-80

ABSTRACT: Mutation-accumulation Lines of Vibrio cholerae 2740-80

PROVIDER: PRJNA256339 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR3826970_1.fastq.gz	Fastqsanger.gz
	SRR3826970_2.fastq.gz	Fastqsanger.gz
	SRR3826980_1.fastq.gz	Fastqsanger.gz
	SRR3826980_2.fastq.gz	Fastqsanger.gz
	SRR3826990_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 199

Similar Datasets

Vibrio cholerae O395 toxSL33S vs toxSL33S delta rpoE

Project description:Transcriptional profiling of Vibrio Cholerae RpoE deletion mutant in toxSL33S mutation background

2015-08-26 | GSE72378 | GEO

Vibrio cholerae O1 biovar El Tor str. N16961

Project description:Mutation-accumulation Lines of Vibrio cholerae N16961

| PRJNA383052 | ENA

Vibrio cholerae strain:3265/80

Project description:Vibrio cholerae strain:3265/80 Genome sequencing and assembly

| PRJNA263047 | ENA

Vibrio cholerae stringent response

Project description:This study is an analysis of changes in gene expression during stringent response in Vibrio cholerae. V. cholerae cells in mid-log were treated with serine hydroxamate and gene expression was compared to untreated cells. Keywords: Stress response, stringent response

2006-12-28 | GSE6616 | GEO

Vibrio cholerae O395 toxSL33S vs toxSL33S delta rpoE

Project description:Transcriptional profiling of Vibrio Cholerae RpoE deletion mutant in toxSL33S mutation background Synchronized samples grown in virulence inducing conditions, strains independently grown and harvested

2015-08-26 | E-GEOD-72378 | biostudies-arrayexpress

California Vibrio cholerae CGH

Project description:Environmental isolates of Vibrio cholerae from California coastal water compared to reference strain N16961. A genotyping experiment design type classifies an individual or group of individuals on the basis of alleles, haplotypes, SNP's. Keywords: genotyping_design; array CGH

2007-07-17 | GSE8499 | GEO

Vibrio cholerae temperature shift microarray analysis

Project description:Temperature is a crucial environmental signal that govers the occurrence of Vibrio cholerae and cholera outbreaks. To understand how temperature impacts the transcriptome of V. cholerae we performed whole-genome level transcriptional profiling using custom microarrays on cells grown at human body temperature (37 C) then shifted to temperatures V. cholerae experience in the environment (15 C and 25 C).

2016-05-09 | GSE81158 | GEO

Response of Vibrio cholerae to exogenous peptidoglycan

Project description:Using transcriptomics, we studied the transcriptional response of Vibrio cholerae to 10 min of exogenously supplied peptidoglycan at 300 µg/mL.

2024-10-24 | GSE216690 | GEO

Expression analysis of Vibrio cholerae O395N1 delta-nqrA-F mutant

Project description:Investigation of whole genome gene expression level changes in a Vibrio cholerae O395N1 delta-nqrA-F mutant, compared to the wild-type strain. Total RNA recovered from wild-type cultures of VIbrio cholerae O395N1 and its nqrA-F mutant strain. Each chip measures the expression level of 3,835 genes from Vibrio cholerae O1 biovar eltor str. N16961 with twenty average probes/gene, with five-fold technical redundancy.

2014-04-01 | E-GEOD-56387 | biostudies-arrayexpress

Vibrio cholerae Expression Study

Project description:Question Addressed: What is the level of expression of genes in Vibrio cholerae recovered from various conditions. These conditions include samples recovered directly from patients (O139 from stool samples from ICDDR,B and N16961 from stool samples from a vaccine trial held in Cincinnati) as well as standard logarithmic and stationary phase grown bacteria. Labeling reactions were performed in duplicate for each stool derived and in quadruplicate for each in vitro grown strain. A common reference was used for each slide, it was composed of RNA from the exponentially growing 92A1552 V. cholerae strain

2013-05-23 | GSE38178 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data