Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Malus domestica

ABSTRACT: Transcriptome changes associated with apple (Malus domestica) root defense response during Pythium ultimum infection

PROVIDER: PRJNA263198 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR1603680.fastq.gz	Fastqsanger.gz
	SRR1603690.fastq.gz	Fastqsanger.gz
	SRR1603700.fastq.gz	Fastqsanger.gz
	SRR1603710.fastq.gz	Fastqsanger.gz
	SRR1603720.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 99

Similar Datasets

Malus x domestica chloroplast LC-MS/MS

Project description:Characterization of Malus x domestica chloroplast proteome

2022-03-01 | PXD009527 | Pride

Transcriptome changes specifically associated with apple (Malus domestica) root defense response during Fusarium proliferatum MR5 infection

Project description:Purpose: The aim of this study was to identify the specific transcriptomic changes in apple root tissue in response to infection by F. Proliferatum.The characterized transcriptome changes during apple root defense responses to F. Proliferatum inoculation should facilitate the identification of the key molecular components, which may differentiate the resistance and susceptibility among apple rootstock germplasm.

2021-04-09 | GSE171688 | GEO

Transcriptomic characterization of Malus domestica response to Fe and P deficiency

Project description:Transcriptomic characterization of Malus domestica response to iron and phosphorus deficiency.

2019-05-01 | GSE122554 | GEO

Malus Domestica

Project description:Transcriptome analysis indicates that suppression of major pathways is associated with apple root susceptibility to Pythium ultimum infection Raw sequence reads

| PRJNA407338 | ENA

Transcriptomic data from Malus domestica young leaves response to Acibenzolar-S-Methyl (ASM) treatment and nitrogen limitation or resupply.

Project description:Plant resistance inducers (PRIs) and nitrogen (N) nutrition are both factors known to act on plant defence but their interaction has been little studied and needs further research. The objective of the study was to further characterize this interaction on apple (Malus domestica) plantlets at the molecular level. The produced dataset allows the investigation of the molecular mechanisms underlying: i) the biotic resistance induced by ASM treatments on apple seedlings, ii) their response to different nitrogen (N) status (N limitation or subsequent N resupply), iii) the combination of both N status and ASM treatment.

2024-07-02 | GSE264541 | GEO

Malus domestica cultivar: McIntosh and Husveti rozmaring

Project description:Genome-wide DNA methylation analysis between long-term in vitro shoot culture and acclimatized apple plants DNA methylation is a process of epigenetic modification that can alter the functionality of a genome. Using whole-genome bisulfite sequencing, this study quantify the level of DNA methylation in the epigenomes of two diploid apple (Malus x domestica) scion cultivars ('McIntosh' and 'Húsvéti rozmaring') derived from three environmental conditions: in vivo mother plants in an orchard, in vitro culture, and acclimatized in vitro plants. The global DNA methylation levels were not dependent on the source of plant material. Significant differences in DNA methylation were identified in 586 out of 45,116 genes, including promoter and coding sequences, and classified as differentially methylated genes (DMGs). Differential methylation was visualised by an MA plot and functional genomic maps were established for biological processes, molecular functions and cellular components. Considering the DMGs, in vitro tissue culture resulted in the highest level of methylation, which decreased after acclimatization and tended to be similar to that in the mother tree. Methylation patterns of the two scions differed, indicating cultivar-specific epigenetic regulation of gene expression during adaptation to various environments. After selecting genes that displayed differences larger than ±10% in CpG and CHG contexts, or larger than ±1.35% in the CHH context from among the DMGs, they were annotated in Blast2GO v5.1.12 for Gene Ontology. These DNA methylation results suggest that epigenetic changes may contribute to the adaptation of apple to environmental changes by modifying gene expression.

2019-07-25 | GSE116995 | GEO

Fire blight disease reactome: RNA-seq transcriptional profile of apple host plant defense responses to Erwinia amylovora pathogen infection

Project description:This RNA-seq experiment captures expression data from challenged and mock-inoculated apple flowers (Malus domestica Golden Delicious) to assess the susceptible response of the primary infection court (48h) of apple by the fire blight pathogen Erwinia amylovora (CFBP 1430).

2016-01-18 | E-MTAB-4110 | biostudies-arrayexpress

Malus domestica

Project description:Malus domestica

| PRJNA1022077 | ENA

Malus domestica

Project description:Malus domestica

| PRJNA757577 | ENA

Malus domestica

Project description:Malus domestica root RNA-seq Raw sequence reads

| PRJNA706609 | ENA