Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Colletotrichum higginsianum IMI 349063

ABSTRACT: The RNAi machinery in Colletotrichum higginsianum has a role in antiviral defense [AGO_IP_smallRNA]

PROVIDER: PRJNA264847 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR1630180.fastq.gz	Fastqsanger.gz
	SRR1630171.fastq.gz	Fastqsanger.gz
	SRR1630181.fastq.gz	Fastqsanger.gz
	SRR1630172.fastq.gz	Fastqsanger.gz
	SRR1630182.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 12

Similar Datasets

Colletotrichum higginsianum IMI 349063

Project description:The RNAi machinery in Colletotrichum higginsianum has a role in antiviral defense [RNAi_mutants_smallRNA]

| PRJNA264848 | ENA

Colletotrichum higginsianum IMI 349063

Project description:The RNAi machinery in Colletotrichum higginsianum has a role in antiviral defense [RNAi_mutants_RNAseq]

| PRJNA264846 | ENA

The RNAi machinery in Colletotrichum higginsianum has a role in antiviral defense

Project description:The RNAi machinery in Colletotrichum higginsianum has a role in antiviral defense

| PRJNA264842 | ENA

Colletotrichum higginsianum IMI 349063

Project description:Colletotrichum higginsianum IMI 349063 genome sequencing project

| PRJNA47061 | ENA

Transcriptome of 4 developmental stages of Colletotrichum higginsianum during infection of Arabidopsis thaliana

Project description:Transcriptome of 4 developmental stages of Colletotrichum higginsianum during infection of Arabidopsis thaliana

2012-06-04 | GSE33683 | GEO

Colletotrichum higginsianum strain:IMI 349061

Project description:Colletotrichum higginsianum strain:IMI 349061 Raw sequence reads

| PRJNA475022 | ENA

The RNAi machinery in Colletotrichum higginsianum has a role in antiviral defense [RNAi_mutants_RNAseq]

Project description:Here we describe the identification and regulation of a novel dsRNA virus in Colletotrichum higginsianum. High throughput sequencing of small RNAs and strand-specific RNA-seq was performed on single gene knock-out mutants created for each RNAi component gene: rdr1, rdr2, rdr3, dcl1, dcl2, ago1, and ago2, and the double mutant: ∆dcl1∆dcl2. De novo assembly of the ∆dcl1 RNA-seq data identified two contigs that represented the forward and reverse strands of an uncharacterized dsRNA virus, designated here as Colletotrichum higginsianum non-segmented dsRNA virus 1 (ChNRV1). We found increased presence of the viral RNA in the RNA-seq datasets of the ∆dcl1, ∆dcl1dcl2, and ∆ago1 strains, suggesting that these genes are required for control of the virus. We show that viral small RNAs co-immunoprecipitate with a 6xFLAG-3xHIS-tagged AGO1 protein by sequencing the small RNAs from immunoprecipitated fractions. Additionally, analyses of the small RNA datasets from the RNAi mutants revealed control of the virus through small RNA-mediated silencing required both AGO1 and DCL1.

2016-04-28 | GSE62707 | GEO