Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Escherichia Coli strain:JPH493

ABSTRACT: HMP reference genome

PROVIDER: PRJNA268326 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR2085794_1.fastq.gz	Fastqsanger.gz
	SRR2085794_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 3 of 3

Similar Datasets

Escherichia Coli strain:JPH264

Project description:HMP reference genome

| PRJNA268327 | ENA

Escherichia coli HMP_JCVI_SC0318

Project description:HMP reference genome

| PRJNA225455 | ENA

Nitrosative stress response in uropathogenic Escherichia coli (UPEC)

Project description:A strain of UPEC CFT073 lacking the three known NO detoxifiaction mechanisms, Hmp, FlRd and Nrf is used to study the global effect of NO on the pathogen

2015-06-15 | GSE69830 | GEO

Nitrosative stress response in uropathogenic Escherichia coli (UPEC)

Project description:A strain of UPEC CFT073 lacking the three known NO detoxifiaction mechanisms, Hmp, FlRd and Nrf is used to study the global effect of NO on the pathogen Cultures were anaerobically grown in triplicates under two conditions: Without nitrosative stress or with nitrosative stress, induced by anaerobic growth on nitrate. RNA was extracted from the samples and following rRNA depletion, samples were analyzed by RNA-seq for genome wide transcriptional differences.

2015-06-15 | E-GEOD-69830 | biostudies-arrayexpress

Localization of NsrR binding sites in the Escherichia coli genome

Project description:NsrR is a nitric oxide sensitive regulator of transcription. In Escherichia coli, NsrR is a repressor of the hmp gene encoding the flavohemoglobin that detoxifies nitric oxide. Several other transcription units (including ytfE, ygbA and hcp-hcr) are known to be subject to regulation by NsrR. In this study, chromatin immunoprecipitation and microarray analysis was used to identify NsrR binding sites in the chromosome of Escherichia coli strain MG1655. Keywords: ChIP-chip

2008-11-19 | GSE11230 | GEO

Escherichia fergusonii strain:MJR8628C

Project description:HMP reference genome

| PRJNA272086 | ENA

Escherichia coli 113302

Project description:Human Microbiome Project (HMP) Reference Genomes

| PRJNA183800 | ENA

Escherichia coli 113303

Project description:Human Microbiome Project (HMP) Reference Genomes

| PRJNA183801 | ENA

Escherichia coli 907357

Project description:Human Microbiome Project (HMP) Reference Genomes