Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Homo sapiens

ABSTRACT: Ribo_seq (aka ribosome profiling) analysis of control and Myc-induced U2OS cells

OTHER RELATED OMICS DATASETS IN: PXD002073

PROVIDER: PRJNA278390 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR1916550.fastq.gz	Fastqsanger.gz
	SRR1916551.fastq.gz	Fastqsanger.gz
	SRR1916542.fastq.gz	Fastqsanger.gz
	SRR1916543.fastq.gz	Fastqsanger.gz
	SRR1916544.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 10

Similar Datasets

Ribosome profiling and RNA sequencing of U2OS cells overexpressing myc

Project description:Ribosome profiling and RNA sequencing was performed on U2OS cells, either control or overexpressing myc.

2017-07-27 | GSE59819 | GEO

Homo sapiens

Project description:RNA-seq analysis of control and Myc-induced U2OS cells

| PRJNA277965 | ENA

Homo sapiens

Project description:GRO-seq analysis of control and Myc-induced U2OS cells

| PRJNA278391 | ENA

Homo sapiens

Project description:Ribosome profiling and RNA sequencing of U2OS cells overexpressing myc

| PRJNA256317 | ENA

Ribo_seq (aka ribosome profiling) analysis of control and Myc-induced U2OS cells

Project description:We used Ribo-seq to examine the effect of Myc activation on protein translation in U2OS cells and correalted these changes with alterations in RNA level measured by RNA-seq on tye same conditions. We also examined these effects in the presence of Torin-1, an inhibitor of mTOR We measure ribosome occupancy profiles in U2OS cells containing an inducible Myc expression vector that were induced or mock-treated in duplicates for 36 hours. In addition, we repeated the experiments in the presence of Torin-1, an inhibitor of mTOR.

2015-11-04 | E-GEOD-66927 | biostudies-arrayexpress

Ribosome profiling with MN and RNaseI

Project description:The aim of this experiment is to compare nucleases used in ribosome profiling using Drosophila melanogaster Kc167 cells and human U2OS osteosarcoma cells. Ribosome profiling was performed from nuclease digested samples using sucrose cushion centrifugation separated ribosomes.

2015-01-08 | E-MTAB-2421 | biostudies-arrayexpress

GRO-seq analysis of control and Myc-induced U2OS cells

Project description:We used GRO-seq to examine the effect of Myc activation on RNA transcription in U2OS cells. We measure in duplicates gene transcription rates in U2OS cells containing an inducible Myc expression vector that were induced or mock-treated in duplicates for 5 hours.

2015-11-04 | E-GEOD-66928 | biostudies-arrayexpress

Analysis of conditions leading to 3'UTR ribosome protected footprints

Project description:Ribosome profiling data from U2OS, HeLa and Kc167 cells under various lysis conditions and using immunoprecipitation to purifiy ribosome associated footprints. Two human cell lines (U2OS and HeLa cells) and a Drosophila melanogaster cell line (Kc167) are used to see if the 3'UTR reads are identified in each cell type. Immunoprecipitation of ribosomes is used to analyse if 3'UTR reads derive from ribosomes (are found with ribosome immunoprecipitates) and to which extent the lysis conditions contribute to the identification of the 3'UTR reads.

2015-01-08 | E-MTAB-3135 | biostudies-arrayexpress

Post-slippage cells increase expression of factors associated with SASP.

Project description:Human transcriptome analysis of U2OS cells treated with nocodazole or DMSO (Control). The gene expression profiling will reveal senescence-associated genes induced upon nocodazole treatment. Our preliminary data show that antimitotic drugs treatment promote post-slippage senescence.

2018-05-17 | GSE114515 | GEO

Homo sapiens

Project description:Ribosome profiling of control and leucine-starved SUM159 cells

| PRJNA287136 | ENA