Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Xanthomonas

ABSTRACT: Xanthomonas Genome sequencing and assembly

PROVIDER: PRJNA280982 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR1974315_subreads.fastq.gz	Fastqsanger.gz
	SRR1974316_subreads.fastq.gz	Fastqsanger.gz
	SRR1974308_1.fastq.gz	Fastqsanger.gz
	SRR1974308_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 5

Similar Datasets

Transcriptional profiling of sweet orange leaves infected with Xanthomonas citri and Xanthomonas aurantifolii pathotype C

Project description:To compare the early transcriptional changes that occur in sweet orange leaves in response to Xanthomonas citri versus Xanthomonas aurantifolii pathotype C infection, plant leaves infiltrated with each bacterial pathogen were examined by RNAseq.

2022-05-11 | GSE202469 | GEO

Xanthomonas

Project description:Xanthomonas Genome sequencing and assembly

| PRJNA1090237 | ENA

Xanthomonas

Project description:Xanthomonas Genome sequencing and assembly

| PRJNA283309 | ENA

Transcriptome Profiling of Xanthomonas oryzae pv. oryzae and Xanthomonas oryzae pv. oryzicola

Project description:This SuperSeries is composed of the following subset Series: GSE9640: Transcriptome Profiling of Xanthomonas oryzae pv. oryzae and Xanthomonas oryzae pv. oryzicola on two different medias GSE9643: Transcriptome Profiling of Xanthomonas oryzae pv. oryzae knockout mutants at different hybridization conditions and PMTs Keywords: SuperSeries Refer to individual Series

2010-05-26 | E-GEOD-9658 | biostudies-arrayexpress

Xanthomonas hortorum

Project description:Xanthomonas hortorum, Xanthomonas axonopodis, Xanthomonas gardneri, Xanthomonas cynarae Genome sequencing and assembly

| PRJNA482368 | ENA

Transcriptome profile of rice genotypes ZH11 and Oseds1 by inoculation with Xanthomonas oryzae pv. oryzae

Project description:OsEDS1 is a key regulator of SA-mediated immunity in plants. The OsEDS1 knockout mutant (Oseds1) was characterized and shown to have increased susceptibility to Xanthomonas oryzae pv. oryzae (Xoo) and Xanthomonas oryzae pv. oryzicola (Xoc), suggesting the positive role of OsEDS1 in regulating rice disease resistance. To identify differentially regulated downstream of Oseds1, we performed transcriptome deep sequencing (RNA-seq) of wild type (ZH11) and Oseds1 inoculated with Xanthomonas oryzae pv. Oryzae (PXO99A).

2023-11-25 | GSE248248 | GEO

Cassava sRNA libraries from non-infected and infected tissues with Xanthomonas axonopodis. pv manihotis

Project description:microRNAs can play a crucial role in stress response in plants, including biotic stress. Some miRNAs are known to respond to bacterial infection. This work has addressed the role of miRNAs in Manihot esculenta (cassava)-Xanthomonas axonopodis pv. manihotis (Xam) interaction. Illumina sequencing was used for analyzing small RNA libraries from cassava tissue infected and non-infected with Xam. Cassava variety MBRA685 (resistant to Xam-CIO151) Six-week-old plants were inoculated with 36h-old cultures of the aggressive Xanthomonas axonopodis pv. manihotis strain CIO151 in both leaves and stems.

2011-12-01 | GSE29379 | GEO

Xanthomonas oryzae pv. oryzae (Indian Isolate): Wild type vs. rpfF mutant

Project description:Transcription profiling of the DSF regulon in Xanthomonas oryzae pv. oryzae (Xoo) using wild type and the rpfF mutant. Cell-cell signaling mediated by the quorum sensing molecule known as Diffusible Signaling factor (DSF) is required for virulence of Xanthomonas group of plant pathogens. DSF in different Xanthomonas and the closely related plant pathogen Xylella fastidiosa regulates diverse traits in a strain specific manner. The transcriptional profiling performed in this study is to elucidate the traits regulated by DSF from the Indian isolate of Xanthomonas oryzae pv. oryzae, which exhibits traits very different from other Xanthomonas group of plant pathogen. In this study, transcription analysis was done between a wild type Xanthomonas oryzae pv. oryzae strain and an isogenic strain that has a mutation in the DSF biosynthetic gene rpfF.

2011-04-02 | GSE27809 | GEO

Xanthomonas

Project description:Xanthomonas prunicola CFBP8355 Genome sequencing and assembly

| PRJNA418723 | ENA

Xanthomonas translucens

Project description:Xanthomonas translucens Genome sequencing and assembly

| PRJNA302486 | ENA