Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Danio rerio

ABSTRACT: RNAseq profiling of zebrafish larval macrophages reveals similarities with human M1 and M2 transcriptome signatures

PROVIDER: PRJNA284108 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR2027910.fastq.gz	Fastqsanger.gz
	SRR2027911.fastq.gz	Fastqsanger.gz
	SRR2027906.fastq.gz	Fastqsanger.gz
	SRR2027907.fastq.gz	Fastqsanger.gz
	SRR2027908.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 6

Similar Datasets

Danio rerio

Project description:RNAseq profiling of FACS-sorted zebrafish larval macrophages reveals similarities with human M1 and M2 transcriptome signatures

| PRJNA314497 | ENA

RNAseq profiling of FACS-sorted zebrafish larval macrophages reveals similarities with human M1 and M2 transcriptome signatures

Project description:We used different zebrafish transgenic lines to sort macrophages, neutrophils and immature lymphoid cells from 5-6 day old zebrafish larvae and analyzed their transcriptomes. Comparison between the different transcriptomes and gene ontology analysis revealed specificities for each cell population. Comparison with previously published data showed that zebrafish larval macrophages expressed several known human M1 and M2 macrophages. Transcriptome analysis of uninfected and infected macrophages from embryos infected by of Mycobacterium marinum revealed infection induced transcriptional changes and a shift towards M1 transcriptomic signature.

2017-08-11 | GSE78954 | GEO

RNAseq profiling of zebrafish larval macrophages reveals similarities with human M1 and M2 transcriptome signatures

2018-12-11 | GSE68920 | GEO

Danio rerio

Project description:zebrafish liver tumor signatures

| PRJNA142817 | ENA

Danio rerio

Project description:mRNA sequencing of larval zebrafish heart tissue

| PRJNA395216 | ENA

Danio rerio

Project description:Raf/MEK signatures in zebrafish liver cells

| PRJNA142819 | ENA

Danio rerio

Project description:Transgenerational inheritance of impaired larval T cell development in zebrafish

| PRJNA385895 | ENA

Danio rerio

Project description:Development of miRNA library from zebrafish kidney macrophages

| PRJNA732563 | ENA

Danio rerio

Project description:RNAseq of wild type and Toddler mutant zebrafish embryos

| PRJNA351784 | ENA

Oxoeicosanoid signaling promotes early antimicrobial defense in zebrafish (Danio rerio)

Project description:RNAseq was performed on hcar1-4+/+ and hcar1-4-/- zebrafish larvae with (2 h and 4 h) or without (0 h) Pseudomonas aeruginosa (PA) ear infection. The transcriptome profile generated here reveals PA14 infection-induced differential gene expression patterns between hcar1-4-/- and hcar1-4+/+ siblings.

2022-10-31 | GSE201604 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data