Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Escherichia coli strain:RS76

ABSTRACT: Genome sequencing and assembly of Extra-intestinal Escherichia coli from humans and animals

PROVIDER: PRJNA286320 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	GCA_001455405.1_sequence_report.txt	Txt

Items per page:

1 - 1 of 1

Similar Datasets

Expression data from an Avian pathogenic Escherichia coli strain

2010-09-10 | GSE21893 | GEO

Expression data from an Avian pathogenic Escherichia coli strain

Project description:Avian pathogenic Escherichia coli strains frequently cause extra-intestinal infections and are responsible for significant economic losses in the poultry industry worldwide. APEC isolates are closely related to human extraintestinal pathogenic E.coli strains and may also act as pathogens for humans. In this work, three type VI secretion systems were deleted to analyze which pathogenicity characteristics would change in the mutants, compared to wild type strain (SEPT 362). Four Avian Pathogenic Escherichia coli strains (one wild type and three deleted mutants) were grown at 37°C in Dulbecco´s Modified Eagle´s Media (DMEM) media until reach O.D 600 = 0.8, for RNA extraction and hybridization on Affymatrix microarrays.

2010-09-09 | E-GEOD-21893 | biostudies-arrayexpress

Escherichia coli strain:H1827/12

Project description:Genome sequencing and assembly of Extra-intestinal Escherichia coli from humans and animals

| PRJNA286318 | ENA

Proteome Analysis of the Extra-intestinal Pathogenic Escherichia coli (ExPEC) Extracellular Vesicles (EVs)

Project description:Label-free quantitative proteomic analysis of Extra-intestinal Pathogenic Escherichia coli (ExPEC) Extracellular Vesicles (EVs)

2022-10-12 | PXD020207 |

Expression data from Avian Pathogenic Escherichia coli

Project description:Avian Pathogenic Escherichia coli (APEC) are a group of extra-intestinal E. coli that infect poultry, and are able to cause a variety of diseases, systemic or localized, collectively designated as colibacillosis. Colibacillosis is the most common bacterial illness in poultry production, resulting in significant economic losses world-wide. Despite of its importance, pathogenicity mechanisms of APEC strains remain not completelly elucidated and available vaccines are not fully effectives. In order to better understand which genes could be related to pathogenicity in different APEC isolated, a microarray analyses of two APEC strains representing: Swollen Head Syndrome and Omphalitis was carried out.

2013-06-18 | GSE48015 | GEO

Dynamic transcriptome profiling of mouse spleen infected with extraintestinal pathogenic Escherichia coli

Project description:Extraintestinal pathogenic Escherichia coli (ExPEC) is a common bacterial strain causing diverse diseases in humans and animals. To analyse the detailed mechanisms underlying ExPEC-mediated sepsis in humans, the transcriptome response of mice at 3h,6h, and 12h after ExPEC infection was analyzed by RNA-seq of mouse spleen samples.

2022-11-11 | GSE140637 | GEO

Psychological Evaluation According Colonic Colonization by Escherichia Coli of Patients After Colorectal Surgery

Project description:The purpose of this study is to determine whether the presence of pathogenic Escherichia coli in colon is associated with psychiatric disorders.

| 2230352 | ecrin-mdr-crc

Escherichia coli strain:ExPEC

Project description:Extra-intestinal pathogenic Escherichia coli Raw sequence reads

| PRJNA516477 | ENA

Expression data from Avian Pathogenic Escherichia coli

2013-06-18 | E-GEOD-48015 | biostudies-arrayexpress

Enteropathogenic Escherichia Coli (EPEC): Does it Have a Role in Colorectal Tumourigenesis?

Project description:Despite the characterization of many aetiologic genetic changes. The specific causative factors in the development of sporadic colorectal cancer remain unclear. This study was performed to detect the possible role of Enteropathogenic Escherichia coli (EPEC) in developing colorectal carcinoma.

| 2184564 | ecrin-mdr-crc

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data