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Phalaenopsis equestris

ABSTRACT: Phalaenopsis equestris Transcriptome or Gene expression

PROVIDER: PRJNA288388 | ENA |

REPOSITORIES: ENA

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Dataset's files

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			Action	DRS
	SRR2080200_1.fastq.gz	Fastqsanger.gz
	SRR2080200_2.fastq.gz	Fastqsanger.gz
	SRR2080202_1.fastq.gz	Fastqsanger.gz
	SRR2080202_2.fastq.gz	Fastqsanger.gz
	SRR2080194_1.fastq.gz	Fastqsanger.gz

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Phalaenopsis equestris

Project description:Phalaenopsis equestris Organism overview

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De novo transcriptome assembly databases in the butterfly orchid Phalaenopsis equestris

Project description:Orchidaceae are renowned for their spectacular flowers as well as other reproductive and ecological adaptations. After the genome of the tropical epiphytic orchid Phalaenopsis equestris was sequenced, we combined Trinity data for de novo assembly and Illumina HiSeq1500 data for RNA-Seq analysis to characterize the transcriptomes of four different organs for a better understanding of the molecular mechanisms driving these characteristics. We present four de novo assembled transcripts reconstructed from RNA collected from the root, stem, leaf, and flower of Phalaenopsis equestris. These sets of transcripts greatly enrich the available data for Phalaenopsis equestris. Here, we present two databases, and each dataset allows for a different type of search for candidate homologues. The first dataset consists of the sets of assembled unigenes, which enable a sequence-based search. A comprehensive analysis of the assembled unigenes revealed the unigenes from root, stem, leaf, and flower with high e-values aligned versus the Nr, Swiss-Port, KEGG, COG, and GO database, respectively. This analysis enabled the production of a second database, which includes sequences correlated with annotated transcript names as well as the confidence of the best hit from BLAST.

2018-06-30 | GSE70411 | GEO

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