Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Xiphophorus couchianus

ABSTRACT: Xiphophorus couchianus Genome sequencing and assembly

PROVIDER: PRJNA290781 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	LNCC02.dat.gz	Other
	LNCC02.fasta.gz	Fasta.gz
	LNCC02.master.dat	Other
	SRR2127230_1.fastq.gz	Fastqsanger.gz
	SRR2127230_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 28

Similar Datasets

Xiphophorus hellerii

Project description:Xiphophorus hellerii Genome sequencing and assembly

| PRJNA290782 | ENA

Xiphophorus maculatus JP163 A RNA-Seq data for PacBio Genome Annotation (Nov.2017)

Project description:RNA from Xiphophorus maculatus (X. maculatus) are isolated and sequenced for annotation of enhanced X. maculatus genome

2017-11-28 | GSE107449 | GEO

Gene expression and alllele inheritence in xiphophorus spontaneous melanoma in backcross BC1 interspecies animals in Xiphophorus maculatus Skin

Project description:RNA-Seq of spontaneous melanoma in Xiphophorus interspecies hybrids, and paired normal skin samples from the same melanoma-bearing animals were performed.

2018-05-01 | GSE113622 | GEO

Xiphophorus maculatus

Project description:Xiphophorus maculatus Genome Sequencing

| PRJNA72525 | ENA

Xiphophorus birchmanni

Project description:Xiphophorus birchmanni Genome sequencing

| PRJNA172015 | ENA

Xiphophorus malinche

Project description:Xiphophorus malinche Genome sequencing

| PRJNA191578 | ENA

Xiphophorus

Project description:Xiphophorus Map

| PRJNA232943 | ENA

Basal gene expression of Xiphophorus skin over a 24 hour period

Project description:Gene expression profiles of Xiphophorus skin over a 24 hour period were established to identify cyclic transcriptional patterns

2020-10-03 | GSE158968 | GEO

Xiphophorus Hybrid Liver Mitochondria PRM

Project description:Hybrids between species contain a mixture of two divergent proteomes, the combination of which may lead to dysfunctional protein-protein interactions. We performed an integrative study on hybrids between the swordtail fishes Xiphophorus malinche and Xiphophorus birchmanni, and found that the combination of X. birchmanni ndufs5 (a nuclear-encoded subunit of mitochondrial Complex I) with X. malinche mtDNA (which codes for multiple Complex I subunits) was lethal. We reasoned that if this lethality was due to dysfunctional protein-protein interactions in Complex I causing improper assembly, then in heterozygotes which possess one functional and one dysfunctional allele, the dysfunctional allele might be more likely to exist in an improperly integrated/folded state, and thus be more likely to be degraded by protein quality control mechanisms. This preferential degradation would be measurable as a bias in the proteome towards the compatible allele of ndufs5, and so we sought to measure the relative abundance of peptides derived from the X. malinche and X. birchmanni alleles of ndufs5 in hybrids heterozygous at ndufs5, with X. malinche ancestry in the mtDNA. Peptides derived from each allele are distinguishable by multiple amino acids, and we used heavy-labeled spike-ins to target multiple ndufs5 peptides from each species in 5 hybrids. We successfully detected one pair of birchmanni/malinche peptides, and compared their relative abundance using peak integration, then compared the ratio to that observed in the heavy-labeled spike-in, for which the true ratio was known. We found that the endogenous peptides were skewed towards the allele from the same species as the mtDNA (X. malinche), consistent with our hypothesis.

2024-05-23 | PXD046217 | Pride

Xiphophorus maculatus

Project description:Xiphophorus maculatus

| PRJNA62121 | ENA