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Diaphorina citri

ABSTRACT: Asian citrus psyllid genome sequencing project

PROVIDER: PRJNA29447 | ENA |

REPOSITORIES: ENA

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Dataset's files

Source:

			Action	DRS
	AWGM01.dat.gz	Other
	AWGM01.fasta.gz	Fasta.gz
	AWGM01.master.dat	Other
	SRR183690_1.fastq.gz	Fastqsanger.gz
	SRR183690_2.fastq.gz	Fastqsanger.gz

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Diaphorina citri

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Transcriptional Analyses of citrus host defense response repression by feeding of Diaphorina citri transmitting Candidatus Liberibacter asiaticus at early stages of infection

Project description:Purpose: We obtained RNA-seq-based differential expression profile of Valencia sweet orange plants challenged against healthy and CLas-infected psyllid infection at 1 dpi and 5 dpi. The goals of this study are to reveal the interaction between citrus and psyllid/CaLas during the early phase of infection and understand the molecular mechanisms underlying the host-pathogen interactions and the susceptibility of most citrus varieties. Methods: leaf mRNA profiles of in vitro cultured Valencia sweet orange (VAL) budwood (WT) and of VAL fed by healthy and CLas-infected psyllid were generated by RNA-seq, in triplicate (one sample is duplicate), using Illumina HiSeq platform. The sequence reads that passed quality filters were used for gene expression and DEG detection analysis by EBseq algorithms. qRT–PCR validation was performed using SYBR Green assays Results: Using the RNA-seq data analysis workflow, we mapped about 136.80M sequence reads per sample to the reference Citrus clementina v1.0 genome and a total of 32,677 genes were detected. The average total mapping of each library was 71.98%. RNA-seq data were validated with qRT–PCR. Conclusions: Our study obtained the transcriptional profiles of citrus host by feeding of psyllid transmitting Candidatus Liberibacter asiaticus at early stages of infection, with biologic replicates, generated by RNA-seq technology. The RNA-seq data analysis workflows reported here should provide a framework for comparative investigations of expression profiles. We conclude that RNA-seq based transcriptome characterization would expedite genetic network analyses and permit the dissection of complex biologic functions.

2020-09-30 | GSE154151 | GEO

Diaphorina citri breed:Asian citrus psyllid

Project description:Diaphorina citri breed:Asian citrus psyllid Raw sequence reads

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Diaphorina citri strain:Kuwayama

Project description:Asian citrus psyllid Iso-Seq and Illumina RNA reads and assembled transcriptome

| PRJNA609978 | ENA

Peptidomics of the Asian Citrus Psyllid

Project description:The aim of this study was to develop methods for the extraction of endogenous peptides from the Asian citrus psyllid, vector of the bacteria that cause the major citrus disease Huanglongbing. In addition, the native peptidome of the Asian citrus psyllid is described, with an emphasis on candidate neuropeptides.

2020-03-19 | PXD014801 | Pride

Asian citrus psyllid proteomics: CLas(-) whole adult ACP

Project description:‘Candidatus Liberibacter asiaticus’ (CLas), the bacterial pathogen associated with citrus greening disease, is transmitted by Diaphorina citri, the Asian citrus psyllid (ACP). This dataset was obtained from analysis of CLas(-) whole adult ACP samples.

2017-02-27 | PXD004454 | Pride

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