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Rice gall dwarf virus

ABSTRACT: Rice gall dwarf virus Raw sequence reads

PROVIDER: PRJNA302215 | ENA |

REPOSITORIES: ENA

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Dataset's files

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			Action	DRS
	SRR2976400.fastq.gz	Fastqsanger.gz
	SRR2976402.fastq.gz	Fastqsanger.gz
	SRR2976397.fastq.gz	Fastqsanger.gz
	SRR2976398.fastq.gz	Fastqsanger.gz
	SRR2976399.fastq.gz	Fastqsanger.gz

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Transcriptome analysis of rice reveals the lncRNA-mRNA regulatory network in response to Rice black-streaked dwarf virus infection

Project description:To better understand the response mechanism of rice plants to Rice black-streaked dwarf virus (RBSDV) infection, we performed a comparative transcriptome analysis between the RBSDV-infected and non-infected rice plants. A total of 1342 mRNAs and 22 lncRNAs were identified to be differentially expressed after RBSDV infection. Most differentially expressed transcripts involved in the plant-pathogen interaction pathway were upregulated after RBSDV infection, indicating the activation of rice defense response by RBSDV. A network of differentially expressed lncRNAs (DElncRNAs) and mRNAs (DEmRNAs) was then constructed. In this network, there are 56 plant-pathogen interaction-related DEmRNAs co-expressing with 20 DElncRNAs, suggesting these DElncRNAs and DEmRNAs may play essential roles in rice innate immunity against RBSDV.

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