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Danio rerio

ABSTRACT: Comparative analyses of super-enhancers reveal conserved elements in vertebrate genomes

PROVIDER: PRJNA305238 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR3370990.fastq.gz	Fastqsanger.gz
	SRR3370991.fastq.gz	Fastqsanger.gz
	SRR3370992.fastq.gz	Fastqsanger.gz
	SRR3370993.fastq.gz	Fastqsanger.gz
	SRR3370994.fastq.gz	Fastqsanger.gz

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Project description:Lysine succinylation (Ksu) is a novel identified post-translational modification that conserved from prokaryote to eukaryotes. As a kind of acylation, Ksu was reported to have different functions with others acylation at lysine residue. However, recently studies on the Ksu mainly focus on the plants and bacterial, there are still very rare studies in the vertebrate. Therefore, the biological role of succinylation remains largely unknown in mammal. In this study, we performed global Ksu mapping in Danio rerio (zebrafish) using mass spectrometry-based proteomics with enrichment of Ksu peptides by immunoprecipitation technology. As a result, we totally identified 552 Ksu sites in 164 proteins. Compared with our previous studies on lysine acetylation and crotonylation, Ksu plays a major role in a diverse metabolic process, such as carbon metabolism and tricarboxylic acid circle. In addition, we defined 5 new succinylation motifs: (su)KA, (suc)KxxxxA, (su)KxxxxL, (su)KxA, (su)KxV. In conclusion, our result provides proteome-wide database for study of Ksu in zebrafish and our bioinformatics result facilitated the understanding of the Ksu in the role of central metabolism.

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