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Arabidopsis thaliana

ABSTRACT: Whole genome bisulfite sequencing of ros1-1 mutant and C24 wild-type (WT)

PROVIDER: PRJNA307154 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR3061910_1.fastq.gz	Fastqsanger.gz
	SRR3061910_2.fastq.gz	Fastqsanger.gz
	SRR3061911_1.fastq.gz	Fastqsanger.gz
	SRR3061911_2.fastq.gz	Fastqsanger.gz

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Project description:Whole genome bisulfite sequencing of rdm16ros1, ros1, nrpd1ros1 mutants and C24 wild-type

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Whole genome bisulfite sequencing of ros1-1 mutant and C24 wild-type (WT)

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Whole genome bisulfite sequencing of rdm16ros1, ros1, nrpd1ros1 mutants and C24 wild-type

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Gene expression data from Arabidopsis C24 wild-type and ros1-1 seedlings.

Project description:We carried out a microarray experiment by using Affymetrix Arabidopsis ATH1 Genechips in order to identify genes that show reduced expression in ros1-1 plants. 2 samples examined: C24 wild-type and ros1-1 mutant (in C24 background).

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Project description:Gene expression data from Arabidopsis C24 wild-type and ros1-1 seedlings.

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Project description:Whole genome bisulfite sequencing of idm1, rdd, ros1 mutants and Col-0 WT

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Project description:Whole genome methylation maps of Wild Type (WT), mutant (ddm1) and epiRILs

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A novel BRAT1–BRP1 complex recognizes histone acetylation and mediates active DNA demethylation and transcriptional activation in Arabidopsis [BS-Seq]

Project description:Active DNA demethylation is an important epigenetic phenomenon in many eukaryotes. In Arabidopsis thaliana, ROS1, a 5-methylcytosine DNA glycosylase, is responsible for active DNA demethylation via a base excision repair process. Here, we found that Bromodomain and ATPase domain-containing protein 1 (BRAT1) associates with BRP1 (BRAT1 Partner 1) and forms a tight BRAT1–BRP1 complex required for DNA demethylation. To identify hypermethylated loci at the whole-genome level in brat1, brp1, and ros1, we performed whole-genome bisulfite sequencing. Compare the DNA methylation profiles of 10-day old seedlings materials of mutants (brat1, brp1, and ros1) to wild type by whole-genome bisulfite sequencing.

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