Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Arabidopsis thaliana

ABSTRACT: Global Genome Repair factors are essential for shaping the DNA methylation landscape in Arabidopsis [BS-seq]

PROVIDER: PRJNA308231 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR3091435_1.fastq.gz	Fastqsanger.gz
	SRR3091435_2.fastq.gz	Fastqsanger.gz
	SRR3091436_1.fastq.gz	Fastqsanger.gz
	SRR3091436_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 4 of 4

Similar Datasets

Arabidopsis thaliana

Project description:Global Genome Repair factors are essential for shaping the DNA methylation landscape in Arabidopsis [small RNA-seq]

| PRJNA308232 | ENA

Global Genome Repair factors are essential for shaping the DNA methylation landscape in Arabidopsis

Project description:Global Genome Repair factors are essential for shaping the DNA methylation landscape in Arabidopsis

| PRJNA308230 | ENA

Arabidopsis thaliana

Project description:Arabidopsis thaliana BS Seq

| PRJDB2937 | ENA

Project description:Shaping the landscape of N6-methyladenosine RNA methylation in Arabidopsis

| PRJNA815899 | ENA

Arabidopsis thaliana sixth generation of mutant fas2 MNase-seq

Project description:CAF-1 is a major nucleosome assembly complex, which functions particularly during replication and DNA-repair. Here, we studied how the nucleosome landscape changes in fas2 a mutant of the CAF-1 complex in the model plant Arabidopsis thaliana

2017-11-13 | GSE87421 | GEO

Arabidopsis thaliana

Project description:Loss of DNA methylation affects recombination landscape in Arabidopsis

| PRJNA149727 | ENA

Arabidopsis thaliana

Project description:An IDN2-containing complex involved in RNA-directed DNA methylation in Arabidopsis [BS-seq]

| PRJNA155799 | ENA

Arabidopsis thaliana

Project description:Arabidopsis EDM2 Promotes IBM1 Distal Polyadenylation and Regulates Genome DNA Methylation Patterns [BS-Seq]

| PRJNA224966 | ENA

Transcript residency on ribosomes reveals a key role for the Arabidopsis thaliana bundle sheath in sulphur and glucosinolate metabolism.

Project description:Leaves of angiosperms are made up of multiple distinct cell types. While the function of mesophyll cells, guard cells, phloem companion cells and sieve elements are clearly described, this is not the case for the bundle sheath (BS). To provide insight into the role of the BS in the C3 species Arabidopsis thaliana, we labelled ribosomes in this cell type with a FLAG tag. We then used immunocapture to isolate these ribosomes followed by sequencing of resident mRNAs. This showed that 5% of genes showed specific splice forms in the BS, and that 15% of genes were preferentially expressed in these cells. The BS translatome strongly implicates the BS in specific roles in sulphur transport and metabolism, glucosinolate biosynthesis and trehalose metabolism. Much of the C4 cycle is differentially expressed between the C3 BS and the rest of the leaf. Furthermore, the global patterns of transcript residency on BS ribosomes overlap to a greater extent with cells of the root pericycle than any other cell type. This analysis provides the first insight into the molecular function of this cell type in C3 species, and also indicates that at least some of the characteristics of BS cells in C4 plants are likely ancestral traits unrelated to the C4 photosynthesis.

2014-02-02 | E-MTAB-4474 | biostudies-arrayexpress

MORC1 represses transposable elements in the mouse male germ line

Project description:The Microrchidia (Morc) family of GHKL ATPases are present in a wide variety of prokaryotic and eukaryotic organisms but are of largely unknown function. Genetic screens in Arabidopsis thaliana have identified Morc genes as important repressors of transposons and other DNA methylated and silent genes. MORC1 deficient mice were previously found to display male-specific germ cell loss and infertility. Here we show that MORC1 is responsible for transposon repression in the male germline in a pattern that is similar to that observed for germ cells deficient for the DNA methyltransferase homolog DNMT3L. Morc1 mutants show highly localized defects in the establishment of DNA methylation at specific classes of transposons, and this is associated with failed transposon silencing at these sites. Our results identify MORC1 as an important new regulator of the epigenetic landscape of male germ cells during the period of global de novo methylation. This data includes: 47 RNA-seq, 4 smRNA-seq, 6 BS-seq, and 2 ChIP-seq datasets

2014-12-12 | E-GEOD-63048 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data