Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Danio rerio

ABSTRACT: Analysis of the T-cell response in Zebrafish

PROVIDER: PRJNA309588 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR3166930_1.fastq.gz	Fastqsanger.gz
	SRR3166930_2.fastq.gz	Fastqsanger.gz
	SRR3166940_1.fastq.gz	Fastqsanger.gz
	SRR3166940_2.fastq.gz	Fastqsanger.gz
	SRR3166950_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 78

Similar Datasets

Danio rerio

Project description:Zebrafish gonadal transcriptome analysis in response to heat

| PRJNA223170 | ENA

Danio rerio

Project description:Quantitative analysis of thyroid response in zebrafish embryos

| PRJNA131189 | ENA

Danio rerio

Project description:Zebrafish response to microbiota

| PRJNA117561 | ENA

Danio rerio

Project description:Zebrafish embryo response to Diethyl maleate

| PRJNA147331 | ENA

Danio rerio

Project description:Transcriptome analysis of zebrafish

| PRJNA1057483 | ENA

Danio rerio

Project description:Hen1 analysis in zebrafish

| PRJNA148581 | ENA

Danio rerio

Project description:Transcriptome response to genistein in zebrafish embryos

| PRJNA150451 | ENA

Danio rerio

Project description:Zebrafish larvae response to AgNPs and AgNO3

| PRJNA260469 | ENA

Construction of Danio rerio Asymmetrical Maps (DreAM)

Project description:Purpose: Construction of 3D zebrafish spatial transcriptomics data for studying the establishment of AP axis. Methods: We performed serial bulk RNA-seq data of zebrafish embryo at three development points. Using the published spatial transcriptomics data as references, we implemented Palette to infer spatial gene expression from bulk RNA-seq data and constructed 3D embryonic spatial transcriptomics. The constructed 3D transcriptomics data was then projected on zebrafish embryo images with 3D coordinates, establishing a spatial gene expression atlas named Danio rerio Asymmetrical Maps (DreAM). Results: DreAM provides a powerful platform for visualizing gene expression patterns on zebrafish morphology and investigating spatial cell-cell interactions. Conclusions: Our work used DreAM to explore the establishment of anteroposterior (AP) axis, and identified multiple morphogen gradients that played essential roles in determining cell AP positions. Finally, we difined a hox score, and comprehensively demonstrated the spatial collinearity of Hox genes at single-cell resolution during development.

2024-04-08 | GSE262578 | GEO

Danio rerio

Project description:Transcriptome analysis of the zebrafish embryonic host response to Edwardsiella tarda infection [experiment B]

| PRJNA143271 | ENA