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Puccinia graminis f. sp. tritici isolate:RKQQC

ABSTRACT: Genome sequencing for wheat stem rust isolate RKQQC, Puccinia graminis f. sp. tritici

PROVIDER: PRJNA313186 | ENA |

REPOSITORIES: ENA

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Dataset's files

Source:

			Action	DRS
	PGFY01.dat.gz	Other
	PGFY01.fasta.gz	Fasta.gz
	PGFY01.master.dat	Other
	SRR3212082_1.fastq.gz	Fastqsanger.gz
	SRR3212082_2.fastq.gz	Fastqsanger.gz

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A three-dimensional chromatin contact map of Puccinia graminis f.sp. tritici

Project description:Puccinia graminis f.sp. tritici (Pgt), the causal agent of stem rust disease in wheat, is one of the most destructive pathogens and can cause severe yield losses. Here, we utilize Hi-C sequencing technology to scaffold and phase the haplotypes for the genome assembly of a US Pgt isolate 99KS76A-1.

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Project description:Puccinia graminis f. sp. tritici is the cause of wheat stem rust. A microarray was designed from genes predicted from the P. graminis f. sp. tritici genome assembly, and gene expression measured for four conditions which include wheat or barley infecting growth stages initiated by urediniospores. mRNA was prepared from fresh urediniospores, uredinospores germinated for 24 hr, wheat seedlings infected with urediniospores for 8 days, and barley seedlings infected with urediniospores for 8 days. The asexual uredinial infection cycle on wheat produces additional urediniospores, which can start new cycles of wheat infection and are readily spread by aerial transport. This expression data is further described in Duplessis et al, Obligate Biotrophy Features Unraveled by the Genomic Analysis of the Rust Fungi, Melampsora larici-populina and Puccinia graminis f. sp. tritici

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