Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Homo sapiens

ABSTRACT: Transcriptome profiling of single HEK293 cells with UMIs sequenced on Ion Torrent Proton (Run 20151215)

PROVIDER: PRJNA314998 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR3222520.fastq.gz	Fastqsanger.gz
	SRR3222530.fastq.gz	Fastqsanger.gz
	SRR3222540.fastq.gz	Fastqsanger.gz
	SRR3222550.fastq.gz	Fastqsanger.gz
	SRR3222560.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 47

Similar Datasets

Homo sapiens

Project description:Transcriptome profiling of single HEK293 cells with UMIs on Ion Torrent Proton (Run 20150702)

| PRJNA350801 | ENA

Homo sapiens

Project description:Transcriptome profiling of single HEK293 cells with UMIs on Ion Torrent Proton (Run 20160225)

| PRJNA350803 | ENA

MicroRNA sequencing of mouse soleus muscle

Project description:MicroRNA sequencing using Ion Torrent Proton platform Single run of a pool of m.soleus from 5 male mice

2015-03-31 | E-GEOD-63342 | biostudies-arrayexpress

MicroRNA sequencing of mouse soleus muscle

Project description:MicroRNA sequencing using Ion Torrent Proton platform

2015-03-31 | GSE63342 | GEO

Homo sapiens

Project description:HEK293 cells 100 cell RNAseq profiling on Ion Proton

| PRJNA314993 | ENA

MicroRNA sequencing and analysis of the newt heart

Project description:MicroRNA sequencing using Ion Torrent Proton platform of the undamaged heart of the red spotted newt Notophthalmus viridescens. MicroRNAS were identified using MIRPIPE

2021-05-24 | GSE69537 | GEO

HEK293 cells 100 cell RNAseq profiling on Ion Proton

Project description:Five libraries from 100 HEK293 cells each were prepared using a Smartseq based custom library preparation approach with unique molecular identifiers. One batch of 2 replicates (A) and one batch of 3 replicates (B) were prepared from different cell cultures. Libraries were sequenced on an Ion Proton

2016-12-19 | GSE79123 | GEO

The Functional Analysis of Granulins and Progranulin

Project description:Recombinant PGRN and GRN peptides were used to treat fully differentiated SH-SY5Y cells. Post-treatment cells were lysed and used for RNA Seq using the ion-Torrent proton platform. Results were validated using real time PCR.

2016-06-30 | E-MTAB-4500 | biostudies-arrayexpress

ena-DATASET-MUG-24-06-2016-09:50:27:418-334 - samples

Project description:RNA-Seq on an Ion Torrent Proton of corresponding tumor material of two metastasized breast cancer patients (Breast7, Breast13).

| EGAD00001002216 | EGA

Evaluating bias-reducing protocols for RNA sequencing library preparation

Project description:The ligation step in RNA sequencing library generation is a known source of bias. We present the first comparison of the standard duplex adaptor protocol supplied by Life Technologies for use on the Ion Torrent PGM with an alternate single adaptor approach involving CircLigase (CircLig). We also investigate whether using the thermostable ligase Methanobacterium thermoautotrophicum RNA ligase K97A (Mth K97A) for the initial ligation step in the CircLigase protocol reduces bias. A pool of small RNA fragments of known composition was converted into a sequencing library using one of three protocols and sequenced on an Ion Torrent PGM. The single adaptor CircLigase-based approach significantly reduces, but does not eliminate, bias in Ion Torrent data. Using Mth K97A as part of the CircLig method does not further reduce bias.

2014-06-24 | E-MTAB-2566 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data