Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Nostoc sp. ATCC 53789

ABSTRACT: Nostoc sp. ATCC 53789 Genome sequencing and assembly

PROVIDER: PRJNA319598 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	LWSY01.dat.gz	Other
	LWSY01.fasta.gz	Fasta.gz
	LWSY01.master.dat	Other
	SRR3452847_1.fastq.gz	Fastqsanger.gz
	SRR3452847_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 6

Similar Datasets

Comparative transcriptomics of wild-type (Nostoc punctiforme ATCC 29133) and hmpD-deletion strains (UCD 543) of Nostoc punctiforme ATCC 29133

Project description:Change in gene expression for a wild-type (Nostoc punctiforme ATCC 29133) and hmpD-deletion strain (UCD 543) of Nostoc punctiforme ATCC 29133 over the time course of hormogonium development This study is further descirbed in Risser, D.D. and Meeks, J.C. 2013. Comparative transcriptomics with a motility deficient mutant leads to identification of a novel polysaccharide secretion system in Nostoc punctiforme. Molecular Microbiology

2013-01-01 | GSE42859 | GEO

Comparative transcriptomics of wild-type (Nostoc punctiforme ATCC 29133) and hmpD-deletion strains (UCD 543) of Nostoc punctiforme ATCC 29133

2013-01-01 | E-GEOD-42859 | biostudies-arrayexpress

Nostoc sp. ATCC 53789

Project description:Nostoc sp. ATCC 53789 de novo genome sequencing

| PRJNA588357 | ENA

Transcriptomic response of Nostoc sp. MG11 under desiccation stress

Project description:To identify the mechanisms of the adaptation to terrestrial ecosystems, an RNA-seq based transcriptome analysis was conducted on a desiccation resistant cyanobacterium, Nostoc sp. MG11.

2022-07-14 | GSE207827 | GEO

Nostoc sp. ATCC 43529 isolate:ATCC 43529

Project description:Nostoc sp. ATCC 43529 from ATCC's xenic culture. Genome sequencing and assembly

| PRJNA319597 | ENA

Effect of deletion of all0854 on gene expression of Nostoc sp. PCC 7120

Project description:To investigate the function of All0854, we constructed the all0854 deletion mutant Mall0854, in which all0854 was knocked out by CRISPER-cpf1. We then performed gene expression profiling analysis using data obtained from RNA-seq of wide type Nostoc sp. PCC 7120 and Mall0854.

2023-05-01 | GSE218875 | GEO

Nostoc sp.

Project description:Nostoc sp. Genome sequencing

| PRJNA534312 | ENA

Analysis of Curdlan Production in Agrobacterium sp. ATCC 31749

Project description:Gene Expression Analysis of Curdlan Production in Agrobacterium sp. ATCC 31749

2012-01-15 | GSE32576 | GEO

Nostoc sp. CMAA1605

Project description:Nostoc sp. Genome sequencing and assembly

| PRJNA419303 | ENA

Organic Nitrogen Source is Critical for Welan Production in Sphingomonas sp. ATCC 31555

Project description:Welan gum is mainly produced by Sphingomonas sp. ATCC 31555 and has broad applications in industry such as that in cement production. Both carbon and nitrogen sources are essential for welan production. However, how nitrogen sources affect the metabolism and gene transcription of welan remains elusive. Here, we used next-generation sequencing RNA-seq to analyze the transcriptome of Sphingomonas sp. ATCC 31555 in the presence of inorganic or organic nitrogen sources. Enriched gene expression and pathway analysis suggest that organic nitrogen sources significantly enhanced the expression of genes in central metabolic pathways of Sphingomonas sp. ATCC 31555 and those critical for welan synthesis compared to that observed using inorganic nitrogen sources. The present study improves our understanding of the molecular mechanism underlying the use of nitrogen in welan synthesis in Sphingomonas sp., as well as provides an important transcriptome resource for Sphingomonas sp. in relation to nitrogen sources.

2016-03-25 | GSE79497 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data