Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Trichoderma reesei QM6a

ABSTRACT: Trichoderma reesei QM6a completed genome sequence

PROVIDER: PRJNA325840 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR4417032_1.fastq.gz	Fastqsanger.gz
	SRR4417032_2.fastq.gz	Fastqsanger.gz
	SRR5229930_1.fastq.gz	Fastqsanger.gz
	SRR5229930_2.fastq.gz	Fastqsanger.gz
	GCA_002006585.1_sequence_report.txt	Txt

Items per page:

1 - 5 of 5

Similar Datasets

Trichoderma reesei QM6a CGH self hybridization

Project description:We perform a self hybridisation comprative genomic hybridization (CGH) in order to validate the probe tiling design we done on Trichoderma reesei. This hybridization was done using QM6a wild type strain.

2010-03-16 | GSE17752 | GEO

Trichoderma reesei QM6a CGH self hybridization

2010-06-23 | E-GEOD-17752 | biostudies-arrayexpress

Trichoderma reesei QM6a isolate:ATCC 13631

Project description:Trichoderma reesei QM6a Transcriptome - QM6a

| PRJNA585268 | ENA

ArrayCGH of Trichoderma reesei strains QM9123, QM9414, NG14 and RutC-30

Project description:Trichoderma reesei is the main industrial producer of cellulases and hemicellulases used to depolymerize biomass in many biotechnical applications. Many production strains in use have been generated by classical mutagenesis. In this study we characterized genomic alterations in hyperproducing mutants of T. reesei by high-resolution comparative genomic hybridisation tiling array. We carried out aCGH analysis of four hyperproducing strains (QM9123, QM9414, NG14 and RutC-30) using QM6a genome as a reference. ArrayCGH analysis identified dozens of mutations in each strain analyzed. 2.1 million oligonucleotide probe custom aCGH (HD2 format, RocheNimblegen) was designed according to T. reesei strain QM6a genome v2.0 (http://genome.jgi-psf.org/Trire2/Trire2.home.html). 14 samples are included in this set; 3 replicates of each strain (except two replicates of QM9123) were analyzed (four mutant strains and QM6a control strain for self-hybridization)

2010-11-26 | E-GEOD-19606 | biostudies-arrayexpress

ArrayCGH of Trichoderma reesei strains QM9123, QM9414, NG14 and RutC-30

2010-11-26 | GSE19606 | GEO

Trichoderma reesei QM6a isolate:ATCC 13631

Project description:Trichoderma reesei QM6a Improved Draft genome sequencing

| PRJNA370015 | ENA

Trichoderma reesei QM6a isolate:ATCC 13631

Project description:Trichoderma reesei QM6a Gene Expression Profiling - 504291_81 transcriptome

| PRJNA580988 | ENA

Trichoderma reesei QM6a isolate:ATCC 13631

Project description:Trichoderma reesei QM6a Gene Expression Profiling - TrSB24.1 transcriptome

| PRJNA695926 | ENA