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Trichoderma reesei QM6a CGH self hybridization

ABSTRACT: We perform a self hybridisation comprative genomic hybridization (CGH) in order to validate the probe tiling design we done on Trichoderma reesei. This hybridization was done using QM6a wild type strain. One biological replicate

ORGANISM(S): Hypocrea jecorina

SUBMITTER: Antoine Margeot

PROVIDER: E-GEOD-17752 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Teolenn: an efficient and customizable workflow to design high-quality probes for microarray experiments.

Jourdren Laurent L Duclos Aurélie A Brion Christian C Portnoy Thomas T Mathis Hugues H Margeot Antoine A Le Crom Stéphane S

Nucleic acids research 20100221 10

Despite the development of new high-throughput sequencing techniques, microarrays are still attractive tools to study small genome organisms, thanks to sample multiplexing and high-feature densities. However, the oligonucleotide design remains a delicate step for most users. A vast array of software is available to deal with this problem, but each program is developed with its own strategy, which makes the choice of the best solution difficult. Here we describe Teolenn, a universal probe design ...[more]

PMID: 20176570

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