Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

BrU-labeled nascent RNA sequencing and m6A-IP from BrU-labeled nascent RNA

ABSTRACT: BrU-labeled nascent RNA sequencing and m6A-IP from BrU-labeled nascent RNA

PROVIDER: PRJNA326350 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR7176890_1.fastq.gz	Fastqsanger.gz
	SRR7176890_2.fastq.gz	Fastqsanger.gz
	SRR7176900_1.fastq.gz	Fastqsanger.gz
	SRR7176900_2.fastq.gz	Fastqsanger.gz
	SRR7176891_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 44

Similar Datasets

M6A IP from BrU-labeled nascent RNA (non-fragmented).

Project description:M6A IP from BrU-labeled nascent RNA (non-fragmented).

| PRJNA471962 | ENA

M6A IP from BrU-labeled and fragmented nascent RNA.

Project description:M6A IP from BrU-labeled and fragmented nascent RNA.

| PRJNA471963 | ENA

M6A IP from BrU-labeled and fragmented nascent RNA.

Project description:M6A immunoprecipitation from 15min BrU labeled and fragmented nascent RNA.

2018-06-19 | GSE114543 | GEO

M6A IP from BrU-labeled nascent RNA (non-fragmented).

Project description:M6A immunoprecipitation from 15 min BrU-labeled nascent RNA (0 min and 30 min chase). All three fractions, Input, eluate and supernatant were subjected to Illumina sequencing.

2018-06-19 | GSE114554 | GEO

High depth sequencing of BrU-labeled nascent RNA.

Project description:BrU incorporation into nascent RNA followed by immunoprecipitation with a BrU specific antibody. The nascent RNA was subsequently eluted with BrU competition.

2017-08-22 | GSE92565 | GEO

High depth sequencing of BrU-labeled nascent RNA in METTL3 depleted cells.

Project description:BrU incorporation into nascent RNA followed by immunoprecipitation with a BrU specific antibody. The nascent RNA was subsequently eluted with BrU competition.

2018-06-19 | GSE114542 | GEO

High depth sequencing of BrU-labeled nascent RNA in METTL3 depleted cells.

Project description:High depth sequencing of BrU-labeled nascent RNA in METTL3 depleted cells.

| PRJNA471827 | ENA

BrU-labeled nascent RNA sequencing and m6A-IP from BrU-labeled nascent RNA

Project description:This SuperSeries is composed of the SubSeries listed below.

2018-06-19 | GSE83561 | GEO

Bru-seq nascent RNA sequencing of human and mouse cells: correlation to replication timing and genome instability

Project description:Bru-seq nascent RNA sequencing (PubMed ID 23973811) was performed on two primary human fibroblast cell lines, mouse embryonic stem cells, and GM12878 human lymphoblastoid cells. Read data, which include both exon and intron signals, were used to identify transcription unit spans genome-wide, where a transcription unit is roughly correspondent to the longest expressed isoform of a gene. However, because algorithms were not constrained by annotated genes, transcription units need not and often do not correspond precisely to gene boundaries and include extragenic transcription. Transcription units were then compared to separate data sets that comprised induced copy number variants, common fragile sites, and Repli-seq replication timing. The objective was to discover the relationships between transcription unit span and size, local genomic instability, and replication timing. This GEO sample series provides the span and intensity of transcription units called genome-wide in the various samples. Correlations to genome stability and replication timing are provided in the associated manuscript. In addition, one human fibroblast line and the mouse embryonic stem cells had paired samples treated and untreated with low dose aphidicolin. Gene RPKM signal intensities are provided for these samples, although comparing these was not the principal objective of the study. Bru-seq single-read nascent RNA sequencing on human 090 fibroblasts +/- aphidicolin treatment, human UMHF1 fibroblasts (3 replicates), human GM12878 lymphoblastoid cells, and mouse embryonic stem cells+/- aphidicolin treatment.

2014-10-17 | E-GEOD-55862 | biostudies-arrayexpress

Homo sapiens

Project description:High depth sequencing of BrU-labeled nascent RNA.

| PRJNA358055 | ENA