Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Bacterial diversity and community structure continuum analysis of rhizosphere, pneumatophore and bulk soils marine sediment of Avicennia marina

PROVIDER: PRJNA327229 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR3732140.fastq.gz	Fastqsanger.gz
	SRR3732150.fastq.gz	Fastqsanger.gz
	SRR3732141.fastq.gz	Fastqsanger.gz
	SRR3732151.fastq.gz	Fastqsanger.gz
	SRR3732142.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 48

Similar Datasets

Identification and Analysis of Red Sea Mangrove (Avicennia marina) microRNAs by High-Throughput Sequencing and their Association with Stress Responses

Project description:we used high-throughput Illumina Genome Analyzer IIx (GAIIx) technology to sequence the small RNA transcriptomes of the mangrove species, Avicennia marina. Based on sequence similarity or the secondary structure of precursors, we have identified 193 conserved miRNAs and 26 novel miRNAs in the small RNA transcriptome of Avicennia marina.

2013-01-23 | GSE43669 | GEO

Identification and Analysis of Red Sea Mangrove (Avicennia marina) microRNAs by High-Throughput Sequencing and their Association with Stress Responses

2013-01-23 | E-GEOD-43669 | biostudies-arrayexpress

GeoChip data of soil microbial communities in the maize rhizosphere and bulk soils

Project description:Microbial communities in the rhizosphere make significant contributions to crop health and nutrient cycling. However, their ability to perform important biogeochemical processes remains uncharacterized. Important functional genes, which characterize the rhizosphere microbial community, were identified to understand metabolic capabilities in the maize rhizosphere using GeoChip 3.0-based functional gene array method. Triplicate samples were taken for both rhizosphere and bulk soil, in which each individual sample was a pool of four plants or soil cores. To determine the abundance of functional genes in the rhizosphere and bulk soils, GeoChip 3.0 was used.

2014-09-12 | E-GEOD-61338 | biostudies-arrayexpress

GeoChip data of soil microbial communities in the maize rhizosphere and bulk soils

2014-12-10 | E-MTAB-2920 | biostudies-arrayexpress

Plant and bird presence strongly influences the microbial communities in soils of Admiralty Bay, Maritime Antarctica

Project description:Understanding the environmental factors that shape microbial communities is crucial, especially in extreme environments, like Antarctica. Two main forces were reported to influence Antarctic soil microbes: birds and plants. Both birds and plants are currently undergoing unprecedented changes in their distribution and abundance due to global warming. However, we need to clearly understand the relationship between plants, birds and soil microorganisms. We therefore collected rhizosphere and bulk soils from six different sampling sites subjected to different levels of bird influence and colonized by Colobanthus quitensis and Deschampsia antarctica in the Admiralty Bay, King George Island, Maritime Antarctic. Microarray and qPCR assays targeting 16S rRNA genes of specific taxa were used to assess microbial community structure, composition and abundance and analyzed with a range of soil physico-chemical parameters. The results indicated significant rhizosphere effects in four out of the six sites, including areas with different levels of bird influence. Acidobacteria were significantly more abundant in soils with little bird influence (low nitrogen) and in bulk soil. In contrast, Actinobacteria were significantly more abundant in the rhizosphere of both plant species. At two of the sampling sites under strong bird influence (penguin colonies), Firmicutes were significantly more abundant in D. antarctica rhizosphere but not in C. quitensis rhizosphere. The Firmicutes were also positively and significantly correlated to the nitrogen concentrations in the soil. We conclude that the microbial communities in Antarctic soils are driven both by bird and plants, and that the effect is taxa-specific.

2012-06-01 | GSE33847 | GEO

rhizosphere metagenome

Project description:Monsoon bacterial diversity of pneumatophore-rhizosphere of Avicennia Marina in vellar estuarine Metagenome

| PRJNA276755 | ENA

rhizosphere metagenome

Project description:Summer bacterial diversity of pneumatophore-rhizosphere of Avicennia Marina in vellar estuarine Metagenome

| PRJNA276756 | ENA

rhizosphere metagenome

Project description:Monsoon bacterial diversity of pneumatophore-rhizosphere of Avicennia Marina in vellar estuarine Metagenome

| PRJNA224968 | ENA

rhizosphere metagenome

Project description:Monsoon bacterial diversity of pneumatophore-rhizosphere of Avicennia Marina in vellar estuarine Metagenome

| PRJNA224975 | ENA

Project description:Bacterial Diversity Profiling of mangrove sediment (Avicennia marina - rhizosphere soil) employing metagenomic approach

| PRJNA985060 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data