Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Neisseria lactamica Y92-1009

ABSTRACT: Neisseria lactamica Y92-1009 Genome sequencing and assembly

PROVIDER: PRJNA331097 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR3995546_subreads.fastq.gz	Fastqsanger.gz
	GCA_002022745.1_sequence_report.txt	Txt

Items per page:

1 - 2 of 2

Similar Datasets

Neisseria lactamica Y92-1009

Project description:Neisseria lactamica Y92-1009 genome sequencing project.

| PRJEA50739 | ENA

Comparative genomic hybridization of one Neisseria cinerea, two Neisseria lactamica, two Neisseria gonorrhoeae, and 48 Neisseria meningitidis isolates

Project description:Microarray comparative genome hybridization (mCGH) data was collected from one Neisseria cinerea, two Neisseria lactamica, two Neisseria gonorrhoeae, and 48 Neisseria meningitidis isolates. For N. meningitidis, these isolates are from diverse clonal complexes, invasive and carriage strains, and all major serogroups. The microarray platform represented N. meningitidis strains MC58, Z2491, and FAM18 and N. gonorrhoeae FA1090.

2007-04-04 | E-TIGR-129 | biostudies-arrayexpress

Neisseria lactamica Colonisation

Project description:Neisseria lactamica Colonisation

| PRJEB2229 | ENA

Neisseria lactamica NS19

Project description:Neisseria lactamica NS19 genome sequencing project

| PRJNA60867 | ENA

Neisseria lactamica ATCC 23970

Project description:Neisseria lactamica ATCC 23970 Genome sequencing and assembly

| PRJNA244570 | ENA

Neisseria lactamica project (Southampton)

Project description:Neisseria lactamica project (Southampton)

| PRJEB9839 | ENA

Neisseria lactamica Y92-1009 complete genome sequence.

Project description:We present the high quality, complete genome assembly of Neisseria lactamica Y92-1009 used to manufacture an outer membrane vesicle (OMV)-based vaccine, and a member of the Neisseria genus. The strain is available on request from the Public Health England Meningococcal Reference Unit. This Gram negative, dipplococcoid bacterium is an organism of worldwide clinical interest because human nasopharyngeal carriage is related inversely to the incidence of meningococcal disease, caused by Neisseria meningitidis. The organism sequenced was isolated during a school carriage survey in Northern Ireland in 1992 and has been the subject of a variety of laboratory and clinical studies. Four SMRT cells on a RSII machine by Pacific Biosystems were used to produce a complete, closed genome assembly. Sequence data were obtained for a total of 30,180,391 bases from 2621 reads and assembled using the HGAP algorithm. The assembly was corrected using short reads obtained from an Illumina HiSeq 2000instrument. This resulted in a 2,146,723 bp assembly with approximately 460 fold mean coverage depth and a GC ratio of 52.3%.

| S-EPMC5525351 | biostudies-literature

Paenibacillus sp. SGZ-1009

Project description:Paenibacillus sp. SGZ-1009 Genome sequencing and assembly

| PRJNA1050438 | ENA

Genome-wide gene expression analysis of 16HBE14 human bronchial epithelial cells in response to Neisseria

Project description:We looked at host gene expression signatures common and specfic to occasionally pathogenic N. meningitidis and commensal N. lactamica. We hypothesise that similar host cell responses during early interactions with N. meningitidis and N. lactamica could inform common mechanisms of colonisation of commensals while differential host cell responses could be capable of altering the outcome of the colonisation process. Total RNA obtained from 16HBE14 cells infected with the different strains of Neisseria from 0 to 7 hours are compared to mock-infected controls at the respective timepoints. 192 samples are analysed. There are 4 to 8 biological replicates per condition.

2012-05-31 | E-GEOD-27557 | biostudies-arrayexpress

Neisseria lactamica 020-06

Project description:Nonpathogenic Neisseria

| PRJNA13472 | ENA