Mus musculus
Ontology highlight
ABSTRACT:
PROVIDER: PRJNA335371 | ENA |
REPOSITORIES: ENA
Similar Datasets
Project description:Mouse Segmental Duplication and Copy-Number Variation
| PRJNA106591 | ENA
Project description:Recurrent DNA copy number variation in the laboratory mouse
| PRJNA102263 | ENA
Project description:Recurrent DNA copy number variation in the laboratory mouse
| PRJNA102439 | ENA
Project description:Copy number variation and gene expression in the mouse
| PRJNA107521 | ENA
Project description:Copy number variation data in malignant mouse mammary cell lines
| PRJNA287047 | ENA
Project description:A transcriptome study in mouse hematopoietic stem cells was performed using a sensitive SAGE method, in an attempt to detect medium and low abundant transcripts expressed in these cells. Among a total of 31,380 unique transcript, 17,326 (55%) known genes were detected, 14,054 (45%) low-copy transcripts that have no matches to currently known genes. 3,899 (23%) were alternatively spliced transcripts of the known genes and 3,754 (22%) represent anti-sense transcripts from known genes.
2009-05-20 | GSE16139 | GEO
Project description:The extent to which differences in germ line DNA copy number contribute to natural phenotypic variation is unknown. We analyzed the copy number content of the mouse genome to a sub-10 kb resolution. We identified over 1,300 copy number variant regions (CNVRs), most of which are < 10 kb in length, are found in more than one strain, and, in total, span 3.2% (85 Mb) of the genome. To assess the potential functional impact of copy number variation, we mapped expression profiles of purified hematopoietic stem and progenitor cells, adipose tissue and hypothalamus to CNVRs in cis. Of the more than 600 significant associations between CNVRs and expression profiles, most map to CNVRs outside of the transcribed regions of genes. In hematopoietic stem/progenitor cells, up to 28% of strain-dependent expression variation is associated with copy number variation, supporting the role of germ line CNVs as major contributors to natural phenotypic variation in the laboratory mouse.
2009-03-09 | GSE10656 | GEO
Project description:Quantitative analysis of chromatin interactions upon copy number variation at mouse 4E2 [4C-seq]
| PRJNA270822 | ENA
Project description:Quantitative analysis of chromatin interactions upon copy number variation at mouse 4E2 [RNA-seq]
| PRJNA270824 | ENA
Project description:A high resolution map of segmental DNA copy number variation in the mouse genome
| PRJNA97179 | ENA