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Comparative mRNA and sRNA transcriptome analysis of TCV-infected wildtype and dcl1-9 mutant Arabidopsis thaliana

ABSTRACT: Comparative mRNA and sRNA transcriptome analysis of TCV-infected wildtype and dcl1-9 mutant Arabidopsis thaliana

PROVIDER: PRJNA336052 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR3992490.fastq.gz	Fastqsanger.gz
	SRR3992510_1.fastq.gz	Fastqsanger.gz
	SRR3992510_2.fastq.gz	Fastqsanger.gz
	SRR3992491.fastq.gz	Fastqsanger.gz
	SRR3992511_1.fastq.gz	Fastqsanger.gz

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Comparative sRNA-Seq analysis of TCV-infected wildtype and dcl1-9 mutant Arabidopsis thaliana

Project description:Belonging to the Carmovirus family, Turnip crinkle virus (TCV) is a positive-strand RNA virus that can infect Arabidopsis. Most Arabidopsis ecotypes are highly susceptible to TCV, except for the TCV resistant line Di-17 derived from ecotype Dijon. Previous studies showed that many of the stress related genes have changed significantly after TCV infection. Besides the virus-triggered genes, small RNAs also play critical roles in plant defense by triggering either transcriptional and/or post-transcriptional gene silencing. In this study, TCV-infected wildtype Arabidopsis thaliana and dcl1-9 mutant plants were subjected to transcriptome and small RNA analysis to investigate the role of DCL1 in virus defense network.

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