Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Arabidopsis thaliana

ABSTRACT: Transcriptome analysis of wild type, ar21 and i4g1 mutants in developing seeds

PROVIDER: PRJNA340889 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR4095610_1.fastq.gz	Fastqsanger.gz
	SRR4095610_2.fastq.gz	Fastqsanger.gz
	SRR4095611_1.fastq.gz	Fastqsanger.gz
	SRR4095611_2.fastq.gz	Fastqsanger.gz
	SRR4095612_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 12

Similar Datasets

abaseed-ABA signaling in Arabidopsis seeds

Project description:ra14-04_nced - abaseed - Identification of abscisic acid (ABA) signaling factors and targets in Arabidopsis developing seeds by comparing ABA deficient and wild type genotypes. Transcriptome comparison of developing seeds harvested at 14 DAP from two ABA-deficient mutants (nced2 nced5 nced9 and nced2 nced5 nced6 nced9) and wild type (Columbia-0).

2015-07-01 | GSE68088 | GEO

ra12-02_aba-seed-ABA signaling in Arabidopsis seeds

Project description:ra12-02_aba-seed - ra12-02_aba-seed - Identification of ABA signaling factors and targets in Arabidopsis developing seeds by comparing ABA deficient and wild type genotypes - Transcriptome comparison of developing seeds harvested at 10 DAP from two ABA-deficient mutants (nced2 nced5 nced9 and nced2 nced5 nced6 nced9) and wild type (Columbia-0)

2019-01-25 | GSE125573 | GEO

abaseed-ABA signaling in Arabidopsis seeds

2015-07-01 | E-GEOD-68088 | biostudies-arrayexpress

Arabidopsis thaliana

Project description:Transcriptome analysis of Atasf1 mutants in comparison with wild type.

| PRJNA212006 | ENA

Arabidopsis thaliana

Project description:transcriptomic analysis of wild type vs mpk3 mutants

| PRJNA151237 | ENA

Arabidopsis thaliana

Project description:Transcriptomics analysis of developing wild type and val1 mutant Arabidopsis embryos

| PRJNA301162 | ENA

Arabidopsis thaliana

Project description:Transcriptome differences between two vitamin C-deficient mutants and wild type

| PRJNA120805 | ENA

The calmodulin-like protein, CML39, is involved in regulating seed development, germination, and fruit development in Arabidopsis

Project description:In addition to the evolutionarily-conserved Ca2+ sensor, calmodulin (CaM), plants possess a large family of CaM-related proteins (CMLs). Using a cml39 loss-of-function mutant, we investigated the roles of CML39 in Arabidopsis and discovered a range of phenotypes across developmental stages and in different tissues. In mature plants, loss of CML39 results in shorter siliques, reduced seed number per silique, and reduced number of ovules per pistil. We also observed changes in seed development, germination, and seed coat properties in cml39 mutants in comparison to wild-type plants. Using radicle emergence as a measure of germination, cml39 mutants showed more rapid germination than wild-type plants. In marked contrast to wild-type seeds, the germination of developing, immature cml39 seeds was not sensitive to cold-stratification. In addition, germination of cml39 seeds was less sensitive than wild-type to inhibition by ABA or by treatments that impaired gibberellic acid biosynthesis. Tetrazolium red staining indicated that the seed-coat permeability of cml39 seeds is greater than that of wild-type seeds. RNA sequencing analysis of cml39 seedlings suggests that changes in chromatin modification may underlie some of the phenotypes associated with cml39 mutants, consistent with previous reports that orthologs of CML39 participate in gene silencing. Aberrant ectopic expression of transcripts for seed storage proteins in 7-day old cml39 seedlings was observed, suggesting mis-regulation of early developmental programs. Collectively, our data support a model where CML39 serves as an important Ca2+ sensor during ovule and seed development, as well as during germination and seedling establishment.

2018-05-01 | GSE108898 | GEO

Arabidopsis thaliana

Project description:carbonic anhydrase (1 or 2) simple or double mutants-Comparative transcriptome analysis between carbonic anhydrase mutants and wild type Arabidopsis

| PRJNA156683 | ENA

Arabidopsis thaliana

Project description:Arabidopsis thaliana seedlings: Wild type vs. zrf1 mutants

| PRJNA306699 | ENA