Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Xanthomonas euvesicatoria pv. vesicatoria str. 85-10

ABSTRACT: Xanthomonas euvesicatoria pv. vesicatoria str. 85-10 Genome sequencing

PROVIDER: PRJNA341901 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Comparative proteomic analysis for proteins regulated by overexpression of two DNA methyltransferases in Xanthomonas campestris pv. vesicatoria strain 85-10.

Project description:- Identification of proteins whose abundance was altered by two DNA methyltransferases (XvDMT1 and XvDMT2) in Xanthomonas campestris pv. vesicatoria strain 85-10. - Shotgun proteomic analysis was used - Three strains were used with three biological replicates (total 9 samples). W+V: the wild-type strain carrying an empty vector. 2165OE: XvDMT1-overexpressing strain. 2405OE: XvDMT2-overexpressing strain.

2021-03-23 | PXD019554 | Pride

Xanthomonas euvesicatoria pv. euvesicatoria

Project description:Xanthomonas euvesicatoria pv. euvesicatoria Genome sequencing

| PRJNA1088443 | ENA

Identification of new protein-coding genes with a potential role in the virulence of the plant pathogen Xanthomonas campestris pv. vesicatoria

Project description:Bacteria of the genus Xanthomonas are economically important plant pathogens. Pathogenicity of Xanthomonas spp. depends on the type III-secretion system and additional virulence determinants. The number of sequenced Xanthomonas genomes increases rapidly, however, accurate annotation of these genomes is difficult, because it relies on gene prediction programs. In this study, we used a mass-spectrometry (MS)-based approach to identify the proteome of Xanthomonas campestris pv. vesicatoria (Xcv) also known as X. euvesicatoria, a well-studied member of plant-pathogenic Xanthomonadaceae. Results Using different culture conditions, MS-datasets were searched against a six-frame-translated genome database of Xcv. In total, we identified 2,593 proteins covering 55% of the Xcv genome, including 764 hitherto hypothetical proteins. Our proteogenomic approach identified 30 new protein-coding genes and allowed correction of the N-termini of 50 protein-coding genes. For five novel and two N-terminally corrected genes the corresponding proteins were confirmed by immunoblot. Furthermore, our data indicate that two putative type VI-secretion systems encoded in Xcv play no role in bacterial virulence which was experimentally confirmed.

2017-08-17 | PXD007140 | Pride

Xanthomonas euvesicatoria

Project description:Xanthomonas euvesicatoria Genome sequencing and assembly

| PRJNA1131846 | ENA

Xanthomonas euvesicatoria

Project description:Xanthomonas euvesicatoria Genome sequencing and assembly

| PRJNA1029321 | ENA

Xanthomonas vesicatoria ATCC 35937

Project description:Xanthomonas vesicatoria ATCC 35937 genome sequencing project

| PRJNA60019 | ENA

Xanthomonas vesicatoria strain:LMG 919

Project description:Xanthomonas vesicatoria LMG 919 Genome sequencing