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Polypedates megacephalus

ABSTRACT: Polypedates megacephalus Raw sequence reads

PROVIDER: PRJNA341914 | ENA |

REPOSITORIES: ENA

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Dataset's files

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			Action	DRS
	SRR4174013_1.fastq.gz	Fastqsanger.gz
	SRR4174013_2.fastq.gz	Fastqsanger.gz
	SRR4174016_1.fastq.gz	Fastqsanger.gz
	SRR4174016_2.fastq.gz	Fastqsanger.gz

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Project description:In prior research on the mitochondrial genome (mitogenome) of Polypedates megacephalus, the one copy of ND5 gene was translocated to the control region (CR) and the ATP8 gene was not found. Gene loss is uncommon among vertebrates. However, in this study, we resequenced the mitogenomes of P. megacephalus from different regions using a "primer bridging" approach with Sanger sequencing technologies, which revealed the "missing" ATP8 gene in P. megacephalus as well as three other previously published Polypedates. The mitogenome of this species was found to contain two copies of the ND5 genes and three copies of the control regions. Furthermore, multiple tandem repeats were identified in the control regions. Notably, we observed that there was no correlation between genetic divergence and geographic distance. However, using the mitogenome, gene expression analysis was performed via RT-qPCR of liver samples and it was thus determined that COIII, ND2, ND4, and ND6 were reduced to 0.64 ± 0.24, 0.55 ± 0.34, 0.44 ± 0.21 and 0.65 ± 0.17, respectively, under low-temperature stress (8 °C) as compared with controls (p < 0.05). Remarkably, the transcript of long non-coding RNA (lncRNA) between positions 8029 and 8612 decreased significantly with exposure to low-temperature stress (8 °C). Antisense ND6 gene expression showed a downward trend, but this was not significant. These results reveal that modulations of protein-coding mitochondrial genes and lncRNAs of P. megacephalus play a crucial role in the molecular response to cold stress.

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Project description:Intestinal microbiota of Polypedates megacephalus tadpole exposed to TCEP

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