Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Synthetic metagenome

ABSTRACT: Synthetic cellulolytic microbial consortia Genome sequencing

PROVIDER: PRJNA344818 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR4302310_1.fastq.gz	Fastqsanger.gz
	SRR4302310_2.fastq.gz	Fastqsanger.gz
	SRR4302311_1.fastq.gz	Fastqsanger.gz
	SRR4302311_2.fastq.gz	Fastqsanger.gz
	SRR4302312_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 28

Similar Datasets

Engineering consortia by polymeric microbial swarmbots

Project description:Synthetic microbial consortia represent a new frontier for synthetic biology given that they can solve more complex problems than monocultures. However, most attempts to co-cultivate these artificial communities fail because of the ‘‘winner-takes-all’’ in nutrients competition. In soil, multiple species can coexist with a spatial organization. Inspired by nature, here we show that an engineered spatial segregation method can assemble stable consortia with both flexibility and precision. We create microbial swarmbot consortia (MSBC) by encapsulating subpopulations with polymeric microcapsules. The crosslinked structure of microcapsules fences microbes, but allows the transport of small molecules and proteins. MSBC method enables the assembly of various synthetic communities and the precise control over the subpopulations. These capabilities can readily modulate the division of labor and communication. Our work integrates the synthetic biology and material science to offer new insights into consortia assembly and server as foundation to diverse applications from biomanufacturing to engineered photosynthesis.

2022-07-04 | PXD034417 | Pride

wetland four-member synthetic community

Project description:The synthetic microbial community used in this study was composed of the major functional guilds (cellulolytic fermenter, sulfate reducer, hydrogenotrophic methanogen and acetoclastic methanogen) that mediate the anaerobic conversion of cellulosic biomass to CH4 and CO2 in wetland soils. The choice of a facultative sulfate-reducing bacterium (Desulfovibrio vulgaris Hildenborough) introduced metabolic versatility and enabled investigations into the community response to sulfate intrusion. The growth status of these multi-species cultures was measured over a week by daily analysis of substrate consumption and product accumulation. The quad-cultures were analyzed with metaproteomics at the end of experiment to characterize the community structure and metabolic activities.

2023-02-17 | PXD035759 | Pride

synthetic metagenome

Project description:Synthetic microbial community partial 16S rRNA amplicons and metagenomes from synthetic microbial community

| PRJNA175870 | ENA

synthetic metagenome

Project description:synthetic metagenome Genome sequencing and assembly

| PRJNA1105546 | ENA

synthetic metagenome

Project description:synthetic bacterium Genome sequencing and assembly

| PRJNA317516 | ENA

Metaproteome analysis of two synthetic bacterial consortia

Project description:Two synthetic bacterial consortia (SC) composed by bacterial strains isolated from a natural phenanthrene-degrading consortium (CON), Sphingobium sp. AM, Klebsiella aerogenes B, Pseudomonas sp. Bc-h and T, Burkholderia sp. Bk and Inquilinus limosus Inq were grown in LMM supplemented with 200 mg/L of phenanthrene (PHN) during 72 hours in triplicate.

2021-09-09 | PXD022882 | Pride

Project description:Synthetic microbial consortia designing

| PRJNA828359 | ENA

Project description:Microbiomes of cellulolytic consortia

| PRJNA844230 | ENA

synthetic metagenome

Project description:Synthetic community 16S RNA sequencing

| PRJNA895199 | ENA

synthetic construct

Project description:synthetic construct Genome sequencing

| PRJNA877268 | ENA