Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Puccinia graminis f. sp. tritici

ABSTRACT: two isolates of Puccinia graminis separately infecting Triticum aestivum cv. Morocco Raw sequence reads

PROVIDER: PRJNA347320 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR5010570.fastq.gz	Fastqsanger.gz
	SRR5010580_1.fastq.gz	Fastqsanger.gz
	SRR5010580_2.fastq.gz	Fastqsanger.gz
	SRR5010590.fastq.gz	Fastqsanger.gz
	SRR5010600.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 39

Similar Datasets

Time course RNA-seq experimant invesitgating two isolates of Puccinia graminis infecting a common wheat host.

Project description:We report a time series RNA-seq experiment involving two isolates of Puccinia graminis separately infecting Triticum aestivum cv. Morocco points post inoculation

2016-12-31 | GSE93015 | GEO

Gene expression analysis of four conditions for Puccinia graminis f. sp. tritici

Project description:Puccinia graminis f. sp. tritici is the cause of wheat stem rust. A microarray was designed from genes predicted from the P. graminis f. sp. tritici genome assembly, and gene expression measured for four conditions which include wheat or barley infecting growth stages initiated by urediniospores. mRNA was prepared from fresh urediniospores, uredinospores germinated for 24 hr, wheat seedlings infected with urediniospores for 8 days, and barley seedlings infected with urediniospores for 8 days. The asexual uredinial infection cycle on wheat produces additional urediniospores, which can start new cycles of wheat infection and are readily spread by aerial transport. This expression data is further described in Duplessis et al, Obligate Biotrophy Features Unraveled by the Genomic Analysis of the Rust Fungi, Melampsora larici-populina and Puccinia graminis f. sp. tritici

2010-12-31 | GSE25020 | GEO

Gene expression analysis of four conditions for Puccinia graminis f. sp. tritici

2010-12-31 | E-GEOD-25020 | biostudies-arrayexpress

A three-dimensional chromatin contact map of Puccinia graminis f.sp. tritici

Project description:Puccinia graminis f.sp. tritici (Pgt), the causal agent of stem rust disease in wheat, is one of the most destructive pathogens and can cause severe yield losses. Here, we utilize Hi-C sequencing technology to scaffold and phase the haplotypes for the genome assembly of a US Pgt isolate 99KS76A-1.

2022-10-01 | GSE210552 | GEO

Transcription analysis by RNAseq of adult wheat after inoculation with Puccinia graminis f. sp. tritici

Project description:The RNA sequencing analysis was undertaken to investigate the transcriptomic changes in adult wheat inoculated with Puccinia graminis f. sp. tritici the causal agent of stem rust disease. The project firstly aims to compare gene expression in one susceptible wheat line with two wheat lines exhibiting adult plant resistance to the stem rust. Secondly, the project aims to examine the temporal changes in gene expression in wheat after inoculation. Wheat plants was grown until maturity under greenhouse conditions. Plants were inoculated with Puccinia graminis f. sp. tritici and the flag leaf sheath sampled for RNA sequencing. The project aims to give essential insight into the adult plant resistance response in wheat to Puccinia graminis f. sp. tritici inoculation.

2022-10-30 | E-MTAB-9681 | biostudies-arrayexpress

Susceptible wheat cultivar infected with the wild type Puccinia graminis (isolate 99KS76A-1) and its mutants carrying knockout mutations in AvrSr35.

Project description:The assess the effect of AvrSr35 knock-out on host-pathogen interaction in the compatible host, we have performed time-course analysis of leaf transcriptomes obtained by infecting susceptible wheat cultivar Fielder with the wild type Puccinia graminis f.sp. tritici (Pgt) isolate 99KS76A-1 and its three mutants, M1, M4 and M7, that carry loss-of-function mutations in the AvrSr35 gene.

2017-11-02 | GSE106397 | GEO

Puccinia graminis f. sp. tritici

Project description:Puccinia graminis f. sp. tritici Genome sequencing

| PRJNA253722 | ENA

Transcriptome-wide Association study identifies putative Elicitors/Suppressor of Puccinia graminis f. sp. tritici that Modulate Barley rpg4-mediated Stem Rust Resistance

Project description:Transcriptomic profiling was done on barley samples incoulated with different Puccinia graminis f. sp. tritici (Pgt) isolates of varying virulence profile on barley stem rust resistance gene rpg4/5 and Rpg1. Several differentally expressed host and pathogen genes were identified while comparing gene expression profiles between group of samples inoculated with isoaltes of varying virulence. Several variants with genes of pathogen were idnetified that are possibly associated with virulence to rpg4/5.

2019-04-30 | GSE130423 | GEO

Puccinia graminis f. sp. tritici

Project description:Puccinia graminis f. sp. tritici Genome Diversity Sequencing

| PRJNA39437 | ENA

Puccinia graminis f. sp. tritici

Project description:Comparative Genome Sequencing of Australian Puccinia graminis tritici races

| PRJNA39225 | ENA